PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.68MCI
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 343aa    MW: 37324.6 Da    PI: 6.9096
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.68MCIgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.00081138160123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  y+C+ C+++F++   L  H  +H
  Aradu.68MCI 138 YECKTCNRTFPSFQALGGHRASH 160
                  99**********99999998887 PP

2zf-C2H2130.0003239261123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++Cg  F++   L  H+r+H
  Aradu.68MCI 239 HECSICGSEFTSGQALGGHMRRH 261
                  78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.26E-8137160No hitNo description
PfamPF139126.7E-13138162IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.305138165IPR007087Zinc finger, C2H2
SMARTSM003550.052138160IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280140160IPR007087Zinc finger, C2H2
SuperFamilySSF576674.26E-8234261No hitNo description
PROSITE profilePS5015710.014239266IPR007087Zinc finger, C2H2
PfamPF139122.8E-11239263IPR007087Zinc finger, C2H2
SMARTSM003550.019239261IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280241261IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MDYKEDYFSN TNSDNCNVVH HDATHHIAKG KRTKRLRLLC GGTTLMTAAS SCSSASGDHG  60
SGDDHGSFSI SSTTNQEEED MANCLILLAQ GGGDSHQKPP QIDDQDEDDN KKIIEIKSRK  120
FSEIETATIN NKVGFYIYEC KTCNRTFPSF QALGGHRASH KKPKLTTIPA AEDKKPPPPS  180
PPPPLPPPPP QQLMMNTNYD HSQQTETVPP NNNNPIISLQ FGSGQKGNFH NNNKPNKIHE  240
CSICGSEFTS GQALGGHMRR HRATAAAAAN NTAQANVGLS RIEATSTVIT TTVEVQPRNI  300
LELDLNLPAP EEDLREPKFQ FATAATKKSM VLSAAPALVD CHY
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.68MCI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015951757.10.0zinc finger protein ZAT5-like
TrEMBLA0A445E5820.0A0A445E582_ARAHY; Uncharacterized protein
STRINGGLYMA11G19830.18e-78(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.11e-53C2H2 family protein