PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.61RDF
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family ERF
Protein Properties Length: 120aa    MW: 13575.5 Da    PI: 10.9545
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.61RDFgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.77.1e-194292256
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                  ykGVr++  +g+WvAeIr+p+    r  r++lg+f t  eAa a++aa++kl+g+
  Aradu.61RDF 42 TYKGVRQRI-WGKWVAEIREPR----RgSRIWLGTFNTSHEAALAYDAAARKLYGH 92
                 69****998.**********83....46*************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.32E-2041101No hitNo description
SuperFamilySSF541711.24E-2142100IPR016177DNA-binding domain
PfamPF008472.7E-144292IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-3042100IPR001471AP2/ERF domain
SMARTSM003804.5E-3542105IPR001471AP2/ERF domain
PROSITE profilePS5103222.0494299IPR001471AP2/ERF domain
PRINTSPR003677.6E-104354IPR001471AP2/ERF domain
PRINTSPR003677.6E-106581IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MIKARMMGTD QERKQLMRKQ AQANSRKGCM RGKGGPQNAT CTYKGVRQRI WGKWVAEIRE  60
PRRGSRIWLG TFNTSHEAAL AYDAAARKLY GHDAKLNLPD LQPSISTTQS NVSNILSSYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-184399360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A6e-184399663ATERF1
3gcc_A6e-184399663ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.61RDF
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015969598.15e-77ethylene-responsive transcription factor RAP2-12-like
RefseqXP_025607310.15e-77ethylene-responsive transcription factor RAP2-2
SwissprotQ9LQZ23e-45DRE2D_ARATH; Dehydration-responsive element-binding protein 2D
TrEMBLA0A445CJZ31e-75A0A445CJZ3_ARAHY; Uncharacterized protein
STRINGGorai.009G271400.12e-47(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25623380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.12e-40ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]