PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.43K0P
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family HSF
Protein Properties Length: 353aa    MW: 39666.6 Da    PI: 7.0123
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.43K0PgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.93.9e-34161072102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   F+ k+y++++d++++ li w   +nsf+v+d+ +f++++Lp +Fkh+nf+SFvRQLn+YgF+kv+ ++         weF++++F +g+k+ll++i 
   Aradu.43K0P  16 FVIKTYHMVNDPSTDYLIAWGPANNSFIVVDPLDFSQSLLPAFFKHNNFSSFVRQLNTYGFRKVDPDK---------WEFANEWFLRGQKHLLKNIV 103
                   9********************999*****************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k+
   Aradu.43K0P 104 RRKH 107
                   *986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.6E-5312105IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.14E-3213105IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.9E-3613105IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.0E-2916105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.7E-181639IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.7E-185466IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405579IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.7E-186779IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MVSINGMEQN NVIAPFVIKT YHMVNDPSTD YLIAWGPANN SFIVVDPLDF SQSLLPAFFK  60
HNNFSSFVRQ LNTYGFRKVD PDKWEFANEW FLRGQKHLLK NIVRRKHGTR SYNSLHFNNH  120
HHGGKQQILA AEELDDEAMM VEIARLKEEQ KALEQELQGM NKRLETTEKR PQQMMAFLCK  180
VVEDPEVLSR VLLERETRQI ADKKRRLITA ATSSSSSSGV AVKTELEEEE PTVGNIISSS  240
PETGFEIDNF CHVASPSPPQ EAAPVAMGWL GQPRPRIGHH YQQQGHNGYR SYNNNYNYSS  300
AATPKPLTVV PPTAPPQGNG TGGGKGHVNF FSEMAAENSP RPPYPFSLLE GGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-251310526129Heat shock factor protein 1
5d5v_B7e-251310526129Heat shock factor protein 1
5d5v_D7e-251310526129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.43K0P
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015966507.10.0heat stress transcription factor C-1
SwissprotQ9LV522e-88HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLA0A445D2I10.0A0A445D2I1_ARAHY; Uncharacterized protein
STRINGXP_007152829.11e-136(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83673038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.11e-81heat shock transcription factor C1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]