PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.3K3P7
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family TCP
Protein Properties Length: 430aa    MW: 46569.6 Da    PI: 8.3203
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.3K3P7genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP120.71.8e-37281372102
          TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.......kaa 91 
                  +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai+el+++++ +++++ ++++   +asns+ +       +++
  Aradu.3K3P7  28 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELAELPAWKPTATtTTVAAAAAASNSNVAvqqqklrEEE 125
                  79**************************************************************4444433322222222222222221111111111 PP

          TCP  92 ksaa.kskksqk 102
                  ++++ ++   ++
  Aradu.3K3P7 126 ENQQlNQIVHRQ 137
                  111112222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.2E-3428144IPR005333Transcription factor, TCP
PROSITE profilePS5136934.2953088IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MGETQHHRPT SSRLGMRAVQ GGHIVRSTGR KDRHSKVCTA KGPRDRRVRL SAHTAIQFYD  60
VQDRLGYDRP SKAVDWLIKK AKAAIDELAE LPAWKPTATT TTVAAAAAAS NSNVAVQQQK  120
LREEEENQQL NQIVHRQSTT VDDAMEASGS RKATALVGGS GRISEFQPQH LNDDNGSSGK  180
YNSGGSGFFP PTLDTDIADT IKSFFPMVGP GEQVLFAGTT ALAFDGGSSG WSEQQHHQEE  240
QEHGRLQRMV AWNNAAADAS SSGHASGFIF NSSATAAVPS PAMFGHGQFF PQRGPLQSSN  300
TPSFRAWIDP SSIATAAMTV DHHHYLSPAA IHQASIGFAG SSSGSFSGFR IPARIQGAEE  360
HDGVSDKPVR WLSLKMFDSE QQVKDQHWNG FSAAREFKMS LDFGCFDFNG SLNPDARLSI  420
FSMTKLGKPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-203588154Putative transcription factor PCF6
5zkt_B2e-203588154Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00203DAPTransfer from AT1G53230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.3K3P7
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6626111e-58KM662611.1 Ananas bracteatus clone 46469a microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015954009.20.0transcription factor TCP3
RefseqXP_020993698.10.0transcription factor TCP3
TrEMBLA0A445A3T21e-128A0A445A3T2_ARAHY; Uncharacterized protein
STRINGXP_004510040.11e-116(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116334105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.32e-45TCP family protein