PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.394BE
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 268aa    MW: 29696.7 Da    PI: 7.6688
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.394BEgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.34.4e-1198142554
                  HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  h ++Er+RR++i ++f  L  l+P +     kK++Ka++L   ++Y+k+L
  Aradu.394BE  98 HIIAERKRREKISQSFIALAALVPGL-----KKMDKASVLGDSIRYVKEL 142
                  899***********************.....9****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.09193142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-1698159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-1598159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.32E-1198147No hitNo description
PfamPF000101.2E-898142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-1299148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MLGSINDETF SPKLSSSSSI LSLRSQILSF DNSDSLSSSP SNNTTEFYEL KNTLNQRQDS  60
VETPNNNNKK SDSLNTQNVE AKSTSTLGKR SPSHAHDHII AERKRREKIS QSFIALAALV  120
PGLKKMDKAS VLGDSIRYVK ELKERLAVLE EESKKTKAKK AEQLHGHGAA VFSSLCEETI  180
DGSLPQVEAR EWGQQVLLRI HCWKEEGILV RILSEIQSLQ LMLLNSSVLS FGDSILDITI  240
IVQAGEGYNL TLNELVKNLR TATLKLMS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A7e-1487159168Transcription factor MYC2
5gnj_B7e-1487159168Transcription factor MYC2
5gnj_E7e-1487159168Transcription factor MYC2
5gnj_F7e-1487159168Transcription factor MYC2
5gnj_G7e-1487159168Transcription factor MYC2
5gnj_I7e-1487159168Transcription factor MYC2
5gnj_M7e-1487159168Transcription factor MYC2
5gnj_N7e-1487159168Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101106ERKRRE
2102107RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.394BE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0990834e-48BT099083.1 Soybean clone JCVI-FLGm-26F18 unknown mRNA.
GenBankKT0311254e-48KT031125.1 Glycine max clone HN_CCL_79 bHLH transcription factor (Glyma17g16720.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015958894.10.0transcription factor bHLH25
TrEMBLA0A445ESQ90.0A0A445ESQ9_ARAHY; Uncharacterized protein
STRINGGLYMA05G23530.11e-82(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110691238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-45bHLH family protein