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Plant Transcription
Factor Database
v4.0
Previous version: v1.0,
v2.0,
v3.0
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Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.38ERD | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 208aa MW: 23735.9 Da PI: 8.1714 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 47.2 | 2.9e-15 | 9 | 51 | 1 | 43 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 k i n+s+r t+ kR+ g++KK E+S+LC+++++ ii+ s+ Aradu.38ERD 9 KYITNDSKRRATLRKRKSGLIKKVDEISTLCGVDACAIIYTSD 51 5799***********************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 9.9E-21 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 17.619 | 1 | 50 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 2.21E-30 | 2 | 85 | No hit | No description |
PRINTS | PR00404 | 8.4E-10 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 8.11E-25 | 3 | 95 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.5E-15 | 11 | 51 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.4E-10 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.4E-10 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MARKKVELKY ITNDSKRRAT LRKRKSGLIK KVDEISTLCG VDACAIIYTS DDPRPEVWPS 60 PSEVNRVISR FKEMPELEQS KKMMSQESFL RQRIQKGQDQ LKKLKNENRK KEMNNLMFQS 120 LAGYQSLDNA TMIDLNDLAW IIDQNIKEVD MQISKLQGQE GASSNNNGVA TINEEQAQVD 180 NIIDGGVFSF VDAANNFQND YRPAPFDP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 24 | RKKVELKYITNDSKRRATLRKRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015949912.1 | 1e-153 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A072UXE2 | 2e-69 | A0A072UXE2_MEDTR; MADS-box transcription factor family protein | ||||
STRING | POPTR_0005s00420.1 | 1e-65 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF452 | 33 | 154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 2e-43 | AGAMOUS-like 80 |