PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.38ERD
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family M-type_MADS
Protein Properties Length: 208aa    MW: 23735.9 Da    PI: 8.1714
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.38ERDgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF47.22.9e-15951143
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                 k i n+s+r  t+ kR+ g++KK  E+S+LC+++++ ii+ s+
  Aradu.38ERD  9 KYITNDSKRRATLRKRKSGLIKKVDEISTLCGVDACAIIYTSD 51
                 5799***********************************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.9E-21160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.619150IPR002100Transcription factor, MADS-box
CDDcd002662.21E-30285No hitNo description
PRINTSPR004048.4E-10323IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.11E-25395IPR002100Transcription factor, MADS-box
PfamPF003192.5E-151151IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-102338IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-103859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MARKKVELKY ITNDSKRRAT LRKRKSGLIK KVDEISTLCG VDACAIIYTS DDPRPEVWPS  60
PSEVNRVISR FKEMPELEQS KKMMSQESFL RQRIQKGQDQ LKKLKNENRK KEMNNLMFQS  120
LAGYQSLDNA TMIDLNDLAW IIDQNIKEVD MQISKLQGQE GASSNNNGVA TINEEQAQVD  180
NIIDGGVFSF VDAANNFQND YRPAPFDP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVELKYITNDSKRRATLRKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015949912.11e-153PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLA0A072UXE22e-69A0A072UXE2_MEDTR; MADS-box transcription factor family protein
STRINGPOPTR_0005s00420.11e-65(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-43AGAMOUS-like 80