PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.20TYF
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family WRKY
Protein Properties Length: 284aa    MW: 31722.6 Da    PI: 8.543
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.20TYFgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.81.3e-29139197259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  +Dgy+WrKYGqK+ ++++ pr+Y+rC+ a +Cpvkkkv+rsaed ++++ tYegeHnh 
  Aradu.20TYF 139 RDGYQWRKYGQKVTRDNPSPRAYFRCSNApNCPVKKKVQRSAEDRRMLVATYEGEHNHV 197
                  7**************************999****************************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.7E-28133197IPR003657WRKY domain
PROSITE profilePS5081125.832133196IPR003657WRKY domain
SuperFamilySSF1182909.55E-25135196IPR003657WRKY domain
SMARTSM007748.6E-34138198IPR003657WRKY domain
PfamPF031061.1E-24140196IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002237Biological Processresponse to molecule of bacterial origin
GO:0002238Biological Processresponse to molecule of fungal origin
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009623Biological Processresponse to parasitic fungus
GO:0009651Biological Processresponse to salt stress
GO:0009685Biological Processgibberellin metabolic process
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0031347Biological Processregulation of defense response
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
METTCVDTSL TLNLVPLHKT DVAPEVLVEE LHRLSCENKK LTETLKQVCE NYVALKTKLS  60
QLSSNNMVSS EKEAAASGTP TRKRKAESES CMSTYTDKCN TPTSTDEETL KRAKHEGSPK  120
VSKIVVRTEA SDTTSLYVRD GYQWRKYGQK VTRDNPSPRA YFRCSNAPNC PVKKKVQRSA  180
EDRRMLVATY EGEHNHVQAQ DSYYSSSLQS DDHYQSPTRV DLVNKSELLE SVGNNNDGKK  240
SSCMRLQPQL LAQQMATSLT KDPNFTAALA TAITGRILSS HFSQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-22122196171WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015945498.10.0PREDICTED: probable WRKY transcription factor 40
TrEMBLA0A0B2PHE04e-95A0A0B2PHE0_GLYSO; Putative WRKY transcription factor 40
TrEMBLC6TEF44e-95C6TEF4_SOYBN; Uncharacterized protein
STRINGGLYMA06G06530.11e-94(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97334115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.15e-62WRKY DNA-binding protein 40