PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.18TLF
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family LBD
Protein Properties Length: 156aa    MW: 17195.6 Da    PI: 8.3916
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.18TLFgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26091.78.4e-292102195
       DUF260   1 aCaaCkvlrrkCakdCvlapyf......paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                  +C++C+vlr++C+++C+l+ ++      p +q  ++ +v+k+FG++n++++l+++p+++r+++++sl+yeA  r+ +Pv+Gavg++++++++l+q+++
  Aradu.18TLF   2 SCNGCRVLRKGCSEECMLRHCLvwiqdnPRAQGYATLFVAKFFGRANLMSFLSSVPTNHRSALFQSLLYEAVGRTINPVSGAVGLLSTGNWHLCQSAV 99 
                  6*************************999999***************************************************************998 PP

       DUF260  93 ela 95 
                  + +
  Aradu.18TLF 100 DKV 102
                  765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.531108IPR004883Lateral organ boundaries, LOB
PfamPF031953.6E-25299IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSEECMLR HCLVWIQDNP RAQGYATLFV AKFFGRANLM SFLSSVPTNH  60
RSALFQSLLY EAVGRTINPV SGAVGLLSTG NWHLCQSAVD KVLRGGGAAL TESSDHLKEA  120
ESEERIESKK QPPSNTTTTH HWPSQTTDTK LLTLFL
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.18TLF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015941790.11e-114LOB domain-containing protein 38 isoform X1
SwissprotQ9SN237e-52LBD38_ARATH; LOB domain-containing protein 38
TrEMBLA0A445BF481e-111A0A445BF48_ARAHY; Uncharacterized protein
STRINGGLYMA20G26910.18e-63(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72134136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.15e-54LOB domain-containing protein 38