PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.10L0H
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 341aa    MW: 37566.6 Da    PI: 8.1103
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.10L0HgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.80.000442072451255
                  HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  Aradu.10L0H 207 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 245
                  6677889999999999998.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.268195244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-10205256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.36E-6205249No hitNo description
Gene3DG3DSA:4.10.280.102.0E-7209252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MMAGNPNNWW SMNPSSLIPY TQYVLGSSSS SIPFNPLVAE IPEPSPQSWS QLLFTGLPGE  60
EERLGFNHFH QSKKLENWDD HNILINNNNN QHNTRVGPNN NNMIVDGIIK QEVSQSGNLY  120
GQEEFHASNG STWSTHMVPI NSSSPRSSVT TNNNNNNNLL DFSYNKVDHS KNQLPYATPQ  180
CNSTSSAGIC KKAKGQSTSS LPPLKVRKEK LGDRITALHQ LVSPFGKTDT ASVLLEAIGY  240
IRFLQSQIEA LSSPYLGNGS KNMRSQQYVH GERNSVFPED PGQLLNDTGL KRKAASSQDS  300
KDNKAKDLRS RGLCLVPVSF TQHVGNENGA DFWAPAYGSG F
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.10L0H
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015938485.10.0transcription factor bHLH68-like
RefseqXP_020986701.10.0transcription factor bHLH68-like
RefseqXP_025617696.10.0transcription factor bHLH68 isoform X1
RefseqXP_029144659.10.0transcription factor bHLH68 isoform X1
SwissprotQ8S3D12e-63BH068_ARATH; Transcription factor bHLH68
TrEMBLA0A445BPW60.0A0A445BPW6_ARAHY; Uncharacterized protein
STRINGAES679681e-140(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12233379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.13e-65bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]