PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.0YU93
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family TCP
Protein Properties Length: 297aa    MW: 32587.8 Da    PI: 8.3696
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.0YU93genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP102.19.4e-3262156391
          TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec......eaesssssasnsssgkaa 91 
                  g+kdrhsk++T +g+RdRRvRls+++a+ ++dLqd+LG+ ++sk ++WLl++ak++i++l+ ++ ++++++       + ++s+ ++++ss+++ 
  Aradu.0YU93  62 GGKDRHSKVCTIRGLRDRRVRLSVPTAINLYDLQDRLGLNQPSKVVDWLLNAAKHEIDDLPPLPIPPSNFTlacypsLPTNKSNHKEQDSSNNNT 156
                  79*************************************************************99999777555555222222222222222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136930.04463121IPR017887Transcription factor TCP subgroup
PfamPF036349.4E-2863141IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MVPSLLSGTM ELEPAANQFR VKNKFDEAVV KKARRMKEIE SSSSDLAAGL DPRIVRVSRA  60
LGGKDRHSKV CTIRGLRDRR VRLSVPTAIN LYDLQDRLGL NQPSKVVDWL LNAAKHEIDD  120
LPPLPIPPSN FTLACYPSLP TNKSNHKEQD SSNNNTSAHV LPNTFLLPTT INHNHHPPSF  180
LGLLNTMPSS IDLHGGVNVV NLPFQNLGAS QILCCSPSPL QRAAAAATTT VTTTQSYFSP  240
SSLSHYNNDN VAAAMEIMDP RQINHHHQMM MVMSNHQNLA TSPNRSESQS HADDSAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A5e-1868122155Putative transcription factor PCF6
5zkt_B5e-1868122155Putative transcription factor PCF6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.0YU93
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015946201.11e-159transcription factor TCP17
RefseqXP_020988754.11e-159transcription factor TCP17
RefseqXP_020988755.11e-159transcription factor TCP17
TrEMBLA0A445B2R21e-156A0A445B2R2_ARAHY; Uncharacterized protein
STRINGGLYMA08G27155.12e-62(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2868922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.15e-37plastid transcription factor 1