PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.07E2R
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family LBD
Protein Properties Length: 195aa    MW: 21054.1 Da    PI: 7.4773
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.07E2RgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26089.73.7e-2811109194
       DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                  +C++C+vlr++C++ C+l+ ++     p++q++++ +++k+FG+s + ++++++p+++r+++++sl+yeA+ r+ +Pv+Gavg++++++++l++++  
  Aradu.07E2R  11 SCNGCRVLRKGCSDMCPLRTCLhwipsPQAQAHATLFLAKFFGRSDLFSFISSVPHNNRPELFQSLLYEACGRTINPVNGAVGLLSTGNWHLCEAALR 108
                  6************************999999**************************************************************98765 PP

       DUF260  94 l 94 
                  +
  Aradu.07E2R 109 T 109
                  5 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.8710116IPR004883Lateral organ boundaries, LOB
PfamPF031951.6E-2411107IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MTRVGPHSEM SCNGCRVLRK GCSDMCPLRT CLHWIPSPQA QAHATLFLAK FFGRSDLFSF  60
ISSVPHNNRP ELFQSLLYEA CGRTINPVNG AVGLLSTGNW HLCEAALRTV LAGGVLTALP  120
EEVIMPVLDD SSASHAALHF NNTSLSEASK RRSVSGVSTP PAVSVVSGEP SEMTLMSFDD  180
GICSHNQRKL LNLFV
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.07E2R
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015935210.11e-143LOB domain-containing protein 38
RefseqXP_025613537.11e-143LOB domain-containing protein 38
SwissprotQ9SN232e-54LBD38_ARATH; LOB domain-containing protein 38
TrEMBLA0A445BUP91e-141A0A445BUP9_ARAHY; Uncharacterized protein
STRINGXP_010092590.12e-63(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72134136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.18e-57LOB domain-containing protein 38