PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.05F6Y
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family GRAS
Protein Properties Length: 497aa    MW: 54680.2 Da    PI: 6.3446
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.05F6YgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS198.24.9e-611724802288
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalkl...fsevsPilkfs 94 
                  ++lL+ cA a+++++l+++q+lL  l+elasp+gd+++Rlaa+ + AL ++l++s s+ +++  ++++ +k+  s+++ +++k+   f+evsP++ f 
  Aradu.05F6Y 172 EQLLIPCALAINAKNLNRVQHLLYVLHELASPTGDANHRLAAHGLSALTHHLSSSYSSSSSSTITNDSGTKTfaSVDSRFFHKTllkFYEVSPWFSFP 269
                  689***************************************************777777666555555555666666666666689*********** PP

         GRAS  95 hltaNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg..........skeeleetgerLakfAeelgvpf 176
                  + +aN  Il+ +++e     +++Hi+D+++s+G+QWp++l+aL+ Rp ++pp +R+T+v +++++                +  + L  +A+++++++
  Aradu.05F6Y 270 NNIANASILQFLSEEessssRTLHILDIGVSHGVQWPTFLEALTRRPgGPPPLVRLTVVTASSNEneqnmetpfsVGPPGDNFSSYLLGYAQTIKLNL 367
                  **********9999878887889************************55566*******99888866666655544455567888999********** PP

         GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh...nsesFlerflealeyysalfdsl 271
                  ++n +   +l++l+ ++++++++E+ +V+ +++lh+l    +  ++er+e+Lk+++s++Pk v+++++++++   + ++F+ +f++ +ey ++++ds+
  Aradu.05F6Y 368 QINRIDNLELQTLNSKSIDTSSDETFIVCAQFRLHHLN---HRNPDERSEFLKALRSMEPKGVILSDNNVECscnGCGNFASGFSRRVEYLWSFLDST 462
                  ****8777*****************************8...55555667*******************9666334456******************** PP

         GRAS 272 eakl.preseerikvEre 288
                  ++ + +res+er+++E e
  Aradu.05F6Y 463 SVAFkGRESDERRVMEGE 480
                  665527888999999976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098533.047145497IPR005202Transcription factor GRAS
PfamPF035141.7E-58172480IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042446Biological Processhormone biosynthetic process
GO:2000032Biological Processregulation of secondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MNMEPNPTQD ALDWQLEGSA SFFPPFLDYP YPIQDYHFWD QNQDIICYHN QIDAGTGSPN  60
AANGAAAVVA TTATSTTCTT PSDPEPYSYN NLPVSDLPTK KRNSSDNDCS VQKPSQSHRA  120
KKFKARSTNE VDNGDSVAEG TSVRKSGGNK KGGGKNNGNN CNNGNKEGRW AEQLLIPCAL  180
AINAKNLNRV QHLLYVLHEL ASPTGDANHR LAAHGLSALT HHLSSSYSSS SSSTITNDSG  240
TKTFASVDSR FFHKTLLKFY EVSPWFSFPN NIANASILQF LSEEESSSSR TLHILDIGVS  300
HGVQWPTFLE ALTRRPGGPP PLVRLTVVTA SSNENEQNME TPFSVGPPGD NFSSYLLGYA  360
QTIKLNLQIN RIDNLELQTL NSKSIDTSSD ETFIVCAQFR LHHLNHRNPD ERSEFLKALR  420
SMEPKGVILS DNNVECSCNG CGNFASGFSR RVEYLWSFLD STSVAFKGRE SDERRVMEGE  480
AAKALTNXXX XXXXXXV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B7e-2816848784393Protein SHORT-ROOT
5b3h_B4e-2816848730339Protein SHORT-ROOT
5b3h_E4e-2816848730339Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking. May be a target of DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK) (PubMed:15961669). Is essential for Nod factor-elicited expression of ERN1 (PubMed:23077241). {ECO:0000269|PubMed:15961669, ECO:0000269|PubMed:23077241}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.05F6Y
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced after treatment with Sinorhizobium meliloti. {ECO:0000269|PubMed:15961669}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015939255.10.0nodulation-signaling pathway 1 protein
RefseqXP_025618389.10.0nodulation-signaling pathway 1 protein
SwissprotQ4VYC80.0NSP1_MEDTR; Nodulation-signaling pathway 1 protein
TrEMBLA0A445BMU30.0A0A445BMU3_ARAHY; Uncharacterized protein
STRINGAET017700.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68743447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.17e-96GRAS family protein
Publications ? help Back to Top
  1. Cerri MR, et al.
    Medicago truncatula ERN transcription factors: regulatory interplay with NSP1/NSP2 GRAS factors and expression dynamics throughout rhizobial infection.
    Plant Physiol., 2012. 160(4): p. 2155-72
    [PMID:23077241]
  2. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]