PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.05F6Y
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family GRAS
Protein Properties Length: 497aa    MW: 54680.2 Da    PI: 6.3446
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.05F6YgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS198.24.9e-611724802288
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalkl...fsevsPilkfs 94 
                  ++lL+ cA a+++++l+++q+lL  l+elasp+gd+++Rlaa+ + AL ++l++s s+ +++  ++++ +k+  s+++ +++k+   f+evsP++ f 
  Aradu.05F6Y 172 EQLLIPCALAINAKNLNRVQHLLYVLHELASPTGDANHRLAAHGLSALTHHLSSSYSSSSSSTITNDSGTKTfaSVDSRFFHKTllkFYEVSPWFSFP 269
                  689***************************************************777777666555555555666666666666689*********** PP

         GRAS  95 hltaNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg..........skeeleetgerLakfAeelgvpf 176
                  + +aN  Il+ +++e     +++Hi+D+++s+G+QWp++l+aL+ Rp ++pp +R+T+v +++++                +  + L  +A+++++++
  Aradu.05F6Y 270 NNIANASILQFLSEEessssRTLHILDIGVSHGVQWPTFLEALTRRPgGPPPLVRLTVVTASSNEneqnmetpfsVGPPGDNFSSYLLGYAQTIKLNL 367
                  **********9999878887889************************55566*******99888866666655544455567888999********** PP

         GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh...nsesFlerflealeyysalfdsl 271
                  ++n +   +l++l+ ++++++++E+ +V+ +++lh+l    +  ++er+e+Lk+++s++Pk v+++++++++   + ++F+ +f++ +ey ++++ds+
  Aradu.05F6Y 368 QINRIDNLELQTLNSKSIDTSSDETFIVCAQFRLHHLN---HRNPDERSEFLKALRSMEPKGVILSDNNVECscnGCGNFASGFSRRVEYLWSFLDST 462
                  ****8777*****************************8...55555667*******************9666334456******************** PP

         GRAS 272 eakl.preseerikvEre 288
                  ++ + +res+er+++E e
  Aradu.05F6Y 463 SVAFkGRESDERRVMEGE 480
                  665527888999999976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098533.047145497IPR005202Transcription factor GRAS
PfamPF035141.7E-58172480IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042446Biological Processhormone biosynthetic process
GO:2000032Biological Processregulation of secondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MNMEPNPTQD ALDWQLEGSA SFFPPFLDYP YPIQDYHFWD QNQDIICYHN QIDAGTGSPN  60
AANGAAAVVA TTATSTTCTT PSDPEPYSYN NLPVSDLPTK KRNSSDNDCS VQKPSQSHRA  120
KKFKARSTNE VDNGDSVAEG TSVRKSGGNK KGGGKNNGNN CNNGNKEGRW AEQLLIPCAL  180
AINAKNLNRV QHLLYVLHEL ASPTGDANHR LAAHGLSALT HHLSSSYSSS SSSTITNDSG  240
TKTFASVDSR FFHKTLLKFY EVSPWFSFPN NIANASILQF LSEEESSSSR TLHILDIGVS  300
HGVQWPTFLE ALTRRPGGPP PLVRLTVVTA SSNENEQNME TPFSVGPPGD NFSSYLLGYA  360
QTIKLNLQIN RIDNLELQTL NSKSIDTSSD ETFIVCAQFR LHHLNHRNPD ERSEFLKALR  420
SMEPKGVILS DNNVECSCNG CGNFASGFSR RVEYLWSFLD STSVAFKGRE SDERRVMEGE  480
AAKALTNXXX XXXXXXV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1320148033290GRAS family transcription factor containing p
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015939255.10.0PREDICTED: nodulation-signaling pathway 1 protein
SwissprotQ4VYC80.0NSP1_MEDTR; Nodulation-signaling pathway 1 protein
TrEMBLG7L7I40.0G7L7I4_MEDTR; GRAS family transcription factor
STRINGGLYMA16G01020.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68743447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.17e-96GRAS family protein