PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G323800.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 226aa    MW: 25865.5 Da    PI: 10.3034
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G323800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.93.9e-18128217198
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                        f+k +++s+v+   +l lp++f+++h   ++++k+ tl de+g +W   +   k++    l++GW++F  a++L +gD +vF+l++ ++f  
  Aqcoe6G323800.1.p 128 FVKPMLQSHVTGGFWLGLPRSFCRKHL--PRSDKEFTLIDEDGGEWYTLFLAAKNG----LSGGWRGFSIAHELVDGDALVFELVEPTKF-- 211
                        89************************5..457789***************556665....9**********************9876777.. PP

                        EEEEE- CS
                 B3  93 vvkvfr 98 
                        +v+++r
  Aqcoe6G323800.1.p 212 KVHIVR 217
                        888877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.43E-25122219IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.9E-21122219IPR015300DNA-binding pseudobarrel domain
CDDcd100171.38E-26126217No hitNo description
PROSITE profilePS5086313.704128219IPR003340B3 DNA binding domain
SMARTSM010193.7E-25128219IPR003340B3 DNA binding domain
PfamPF023621.1E-15128217IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MVKASTTSYE ELRQKRMEEN KKRMEELNLT KLALAVRNAS PKLSAQVKPR SARKAVTPVE  60
VRRSSRNSGK PTPVYKEVRM DIQERPRRYY KTHRDLSNRV YADYESRVDA TERAEDIESK  120
LENGFPSFVK PMLQSHVTGG FWLGLPRSFC RKHLPRSDKE FTLIDEDGGE WYTLFLAAKN  180
GLSGGWRGFS IAHELVDGDA LVFELVEPTK FKVHIVRVNG PKNHT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010269220.11e-88PREDICTED: B3 domain-containing protein At3g19184-like
SwissprotQ1G3M35e-70Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBLA0A2G5C5Z41e-155A0A2G5C5Z4_AQUCA; Uncharacterized protein
STRINGAquca_095_00007.11e-156(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.12e-61B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]