PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G101200.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 445aa    MW: 51226.2 Da    PI: 9.8753
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G101200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.21.1e-1611861798
                       E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                 B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                        lp  f+++++++   s ++tl+ ++g++W++kl  rk  gr++l +GWkeFv+ + +++g +++F++dg+s+f  +v +++
  Aqcoe6G101200.2.p 11 DLPIMFVKKYEND--FSGDVTLKVPTGNVWNMKL--RKVNGRTYLCDGWKEFVDHHSVCAGYVLTFRYDGNSSF--YVIICD 86
                       58999*****877..6779***************..99999*******************************99..999887 PP

2B3598.3e-19166262199
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                        f+ v+ ps+v  +++l +p +f+++h gk+ +++t+ + d ++ r W+ ++iy +++      +  Wk+F+k+n+L+e+D+++F+l++ ++ 
  Aqcoe6G101200.2.p 166 FVLVMQPSSVEGRCILNVPGSFLKKHIGKESCDITMFVSDdSHERIWRTRCIYyDNNVA----KFVWKKFAKDNDLRENDVCMFELSQMKSV 253
                        788999********************99999*******997888*******88555554....455********************998999 PP

                        ..EEEEE-S CS
                 B3  91 elvvkvfrk 99 
                        +++v++fr+
  Aqcoe6G101200.2.p 254 TFKVSIFRE 262
                        9*****996 PP

3B3521.3e-16357441494
                        E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                 B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                        +l +  +   g+l lp +f++++  k+e+   +++ d++gr+W v++  + +s++y l +GW+  v   +LkegD++ F+l++ ++f l++
  Aqcoe6G101200.2.p 357 KL-SRTYVHGGLLQLPSSFIRKYLPKTES--SVRIVDSKGRTWYVRY--NLNSQGY-LYQGWNTVVLKSNLKEGDVCAFELIDMENFILRL 441
                        34.444555678***********544444..6***************..9999997.566*********************9878885555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.296188IPR003340B3 DNA binding domain
SMARTSM010192.5E-10588IPR003340B3 DNA binding domain
SuperFamilySSF1019363.73E-211195IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.1E-191297IPR015300DNA-binding pseudobarrel domain
CDDcd100174.73E-161286No hitNo description
PfamPF023624.0E-141286IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.1E-21158261IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-20160264IPR015300DNA-binding pseudobarrel domain
CDDcd100171.98E-19164261No hitNo description
SMARTSM010198.3E-13166263IPR003340B3 DNA binding domain
PROSITE profilePS5086310.63166263IPR003340B3 DNA binding domain
PfamPF023621.0E-15166262IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.1E-18347437IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.86E-18349438IPR015300DNA-binding pseudobarrel domain
CDDcd100174.95E-12352433No hitNo description
PROSITE profilePS5086313.62353444IPR003340B3 DNA binding domain
SMARTSM010194.1E-8353442IPR003340B3 DNA binding domain
PfamPF023622.6E-15353440IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MVMQYMKYST DLPIMFVKKY ENDFSGDVTL KVPTGNVWNM KLRKVNGRTY LCDGWKEFVD  60
HHSVCAGYVL TFRYDGNSSF YVIICDMTTA EIEYPSKKVK LEDPAHGRET LVPGKNGVEK  120
LNGDKSTHKL TAQLGELSVK NGQSRKLMAK ERIKAMMPSK PKNPYFVLVM QPSSVEGRCI  180
LNVPGSFLKK HIGKESCDIT MFVSDDSHER IWRTRCIYYD NNVAKFVWKK FAKDNDLREN  240
DVCMFELSQM KSVTFKVSIF REVEDVTPRV LRDTSKMQVF NQSECRTAKK KKVMNNGKVE  300
ALEVPSHGFV RGDGYGYPSK EESKGKNVAN KFLDRTVTRT RPMPFSFKSD YHFFIIKLSR  360
TYVHGGLLQL PSSFIRKYLP KTESSVRIVD SKGRTWYVRY NLNSQGYLYQ GWNTVVLKSN  420
LKEGDVCAFE LIDMENFILR LSVL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A5e-1514126621146B3 domain-containing transcription factor VRN1
4i1k_B5e-1514126621146B3 domain-containing transcription factor VRN1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-36B3 family protein