PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G101200.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 474aa    MW: 54515.9 Da    PI: 10.018
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G101200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.65.3e-1925115198
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                        ffk+  ++d  k ++l lp  f+++++++   s ++tl+ ++g++W++kl  rk  gr++l +GWkeFv+ + +++g +++F++dg+s+f  
  Aqcoe6G101200.1.p  25 FFKII-HPDIIKDQQLDLPIMFVKKYEND--FSGDVTLKVPTGNVWNMKL--RKVNGRTYLCDGWKEFVDHHSVCAGYVLTFRYDGNSSF-- 109
                        56655.999*****************988..6779***************..99999*******************************99.. PP

                        EEEEE- CS
                 B3  93 vvkvfr 98 
                        +v +++
  Aqcoe6G101200.1.p 110 YVIICD 115
                        999887 PP

2B358.99.2e-19195291199
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                        f+ v+ ps+v  +++l +p +f+++h gk+ +++t+ + d ++ r W+ ++iy +++      +  Wk+F+k+n+L+e+D+++F+l++ ++ 
  Aqcoe6G101200.1.p 195 FVLVMQPSSVEGRCILNVPGSFLKKHIGKESCDITMFVSDdSHERIWRTRCIYyDNNVA----KFVWKKFAKDNDLRENDVCMFELSQMKSV 282
                        788999********************99999*******997888*******88555554....455********************998999 PP

                        ..EEEEE-S CS
                 B3  91 elvvkvfrk 99 
                        +++v++fr+
  Aqcoe6G101200.1.p 283 TFKVSIFRE 291
                        9*****996 PP

3B351.81.4e-16386470494
                        E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                 B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                        +l +  +   g+l lp +f++++  k+e+   +++ d++gr+W v++  + +s++y l +GW+  v   +LkegD++ F+l++ ++f l++
  Aqcoe6G101200.1.p 386 KL-SRTYVHGGLLQLPSSFIRKYLPKTES--SVRIVDSKGRTWYVRY--NLNSQGY-LYQGWNTVVLKSNLKEGDVCAFELIDMENFILRL 470
                        34.444555678***********544444..6***************..9999997.566*********************9878885555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.9E-2320116IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-2422124IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.77524117IPR003340B3 DNA binding domain
CDDcd100177.77E-1924115No hitNo description
PfamPF023621.3E-1625115IPR003340B3 DNA binding domain
SMARTSM010197.8E-1925117IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.5E-21187290IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.7E-20189293IPR015300DNA-binding pseudobarrel domain
CDDcd100172.49E-19193290No hitNo description
PfamPF023621.2E-15195291IPR003340B3 DNA binding domain
SMARTSM010198.3E-13195292IPR003340B3 DNA binding domain
PROSITE profilePS5086310.63195292IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.6E-18376466IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-18378467IPR015300DNA-binding pseudobarrel domain
CDDcd100175.73E-12381462No hitNo description
PROSITE profilePS5086313.62382473IPR003340B3 DNA binding domain
PfamPF023622.9E-15382469IPR003340B3 DNA binding domain
SMARTSM010194.1E-8382471IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MPRITSKQGG TNQFSCHRDK RKASFFKIIH PDIIKDQQLD LPIMFVKKYE NDFSGDVTLK  60
VPTGNVWNMK LRKVNGRTYL CDGWKEFVDH HSVCAGYVLT FRYDGNSSFY VIICDMTTAE  120
IEYPSKKVKL EDPAHGRETL VPGKNGVEKL NGDKSTHKLT AQLGELSVKN GQSRKLMAKE  180
RIKAMMPSKP KNPYFVLVMQ PSSVEGRCIL NVPGSFLKKH IGKESCDITM FVSDDSHERI  240
WRTRCIYYDN NVAKFVWKKF AKDNDLREND VCMFELSQMK SVTFKVSIFR EVEDVTPRVL  300
RDTSKMQVFN QSECRTAKKK KVMNNGKVEA LEVPSHGFVR GDGYGYPSKE ESKGKNVANK  360
FLDRTVTRTR PMPFSFKSDY HFFIIKLSRT YVHGGLLQLP SSFIRKYLPK TESSVRIVDS  420
KGRTWYVRYN LNSQGYLYQG WNTVVLKSNL KEGDVCAFEL IDMENFILRL SVL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A3e-1517029521146B3 domain-containing transcription factor VRN1
4i1k_B3e-1517029521146B3 domain-containing transcription factor VRN1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.14e-39B3 family protein