PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G100700.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 207aa    MW: 23795 Da    PI: 8.9064
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G100700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.31.6e-19108198398
                        EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                 B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                         ++ +s+v++s +l +pk+fa+++ ++  ++  +tl+ ++g sW +++  + ++ r  l++GWkeF+ an+L+e D+++F+l++r+  el+v
  Aqcoe6G100700.2.p 108 VTMRRSYVSESYCLNIPKDFADKYLKDAFQG--ITLQLSNGGSWHIRY--QVGDHR-KLGRGWKEFAVANHLQEEDVCIFELVNRNHIELKV 194
                        57889*******************7665565..8888888********..666555.59************************999999999 PP

                        EEE- CS
                 B3  95 kvfr 98 
                         +fr
  Aqcoe6G100700.2.p 195 FIFR 198
                        9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.6E-2498198IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-23101200IPR015300DNA-binding pseudobarrel domain
CDDcd100176.62E-22104198No hitNo description
PROSITE profilePS5086313.733106200IPR003340B3 DNA binding domain
SMARTSM010193.2E-13106200IPR003340B3 DNA binding domain
PfamPF023623.0E-17108198IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MSSLPGVSLD EPVNDNLQQM KNKESALELS SSMFCKNVHY NQINSTRLKL ANDEPDRNNQ  60
ERGKKESSIL MQGLTKVSVA RRVMNNQEKE RSIIAARAFT SENPFCIVTM RRSYVSESYC  120
LNIPKDFADK YLKDAFQGIT LQLSNGGSWH IRYQVGDHRK LGRGWKEFAV ANHLQEEDVC  180
IFELVNRNHI ELKVFIFRVR SLQHNE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A8e-217819921142B3 domain-containing transcription factor VRN1
4i1k_B8e-217819921142B3 domain-containing transcription factor VRN1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.16e-22B3 family protein