PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G100500.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 217aa    MW: 24670 Da    PI: 7.9408
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G100500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.53.1e-151098198
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                 B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
                       ffk l   + ++++ l+lp +++++++g+   +k+ +l++++ rsWev +  +k ++  +l + W +F+k+n L+ gD +vF ++g+sef   v
  Aqcoe6G100500.1.p 10 FFKLL--IHDFSQQ-LCLPTDYINNFNGDV--PKQFILTSSTRRSWEVSV--KKVDNDLFLCEKWPNFAKDNALEFGDLLVFIYNGNSEF--DV 94
                       67777..6666665.********8886664..4469**************..**********************************9999..99 PP

                       EEE- CS
                 B3 95 kvfr 98
                       k+f 
  Aqcoe6G100500.1.p 95 KIFG 98
                       9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-196102IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.08E-216102IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.7887100IPR003340B3 DNA binding domain
CDDcd100178.33E-15897No hitNo description
SMARTSM010194.2E-1210100IPR003340B3 DNA binding domain
PfamPF023621.6E-121097IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MNRISSAPSF FKLLIHDFSQ QLCLPTDYIN NFNGDVPKQF ILTSSTRRSW EVSVKKVDND  60
LFLCEKWPNF AKDNALEFGD LLVFIYNGNS EFDVKIFGSN ACEKEVELAL KNNIESNSYV  120
REKKDGKDME NSDKLHSQVM LKCYKRRRTN EAVVTDKMTS LTNSISIKTE RSEALEVAHS  180
FTATFQPSLK YRIGTPNKIV QEKGIAEKDG AVGFVW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140146LKCYKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5EA171e-159A0A2G5EA17_AQUCA; Uncharacterized protein
STRINGAquca_010_00339.11e-160(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.12e-18B3 family protein