PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G472800.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 303aa    MW: 34291 Da    PI: 9.5378
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G472800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3985.8e-312106199
                        EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr 87 
                        f+kv tpsdv+k++rlv+pk++ae++    +  +e++  l +ed+ g+sW+++++y+++s++yv+tkGW++Fvk+++L +gD+v F++  g+
  Aqcoe5G472800.1.p   2 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSTANEKGLLLNFEDRCGKSWRFRYSYWNSSQSYVMTKGWSRFVKEKKLYAGDIVSFERGaGE 93 
                        89**************************99445568889************************************************76566 PP

                        .SEE..EEEEE-S CS
                 B3  88 .sefelvvkvfrk 99 
                          + +l++ ++r+
  Aqcoe5G472800.1.p  94 sVKDRLYIDWRRR 106
                        6788899999887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100174.67E-26189No hitNo description
Gene3DG3DSA:2.40.330.105.5E-391109IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-29194IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.3112107IPR003340B3 DNA binding domain
SMARTSM010197.2E-232107IPR003340B3 DNA binding domain
PfamPF023622.1E-282106IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MFDKVVTPSD VGKLNRLVIP KQHAEKYFPL DSTANEKGLL LNFEDRCGKS WRFRYSYWNS  60
SQSYVMTKGW SRFVKEKKLY AGDIVSFERG AGESVKDRLY IDWRRRSDVQ DPGMLPPLPL  120
LHPLSMPRSA PWGGLMLPPN MPMHMPRDDM VWQRMNYAQN HNHFQRTNYS GISANGYNVV  180
NSGSSPIFYL RSSAPSQQIG VIQQGRDAPT VFNSVPVVHG KASAKRFRLF GVNLECPMPE  240
NPEYQFLDSA TINHPTIGSL APSQIPPSIP PLQLRLYNSE SPPREQSDSP RENASMSLDL  300
DM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-6011067113B3 domain-containing transcription factor NGA1
5os9_B3e-6011067113B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010251300.11e-121PREDICTED: B3 domain-containing protein Os03g0120900-like
SwissprotQ6EU308e-70Y2835_ORYSJ; B3 domain-containing protein Os02g0683500
TrEMBLA0A2G5CUH10.0A0A2G5CUH1_AQUCA; Uncharacterized protein
STRINGAquca_037_00291.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.11e-65B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]