PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G352400.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family RAV
Protein Properties Length: 359aa    MW: 41491.8 Da    PI: 7.7234
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G352400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.11.7e-114491255
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       ++kGV     +g W A+I++      + r++lg+f +++eAa a++ a++kl+g
  Aqcoe5G352400.1.p 44 RFKGVVLQQ-NGHWGAQIYVK-----HERIWLGTFNSEKEAAMAYDSAALKLRG 91
                       589998777.8*********3.....5**********99*************98 PP

2B389.62.4e-28166267190
                        EEEE-..-HHHHTT-EE--HHH.HTT.............---.....--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.............ggkke...esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76 
                        f+k+ltpsdv+k++rlv+pkk+a ++             +        + +l + d++ ++W+++++y+k+s++yv+t+GW++Fvk+++Lk+
  Aqcoe5G352400.1.p 166 FQKELTPSDVGKLNRLVIPKKHAVKYfpqvsegkegeeeD---GgdvDDLQLPFVDRQMKTWKFRYCYWKSSQSYVFTRGWNRFVKEKELKA 254
                        99****************************9888655551...044466789**************************************** PP

                        T-EEEEEE-SSSEE CS
                 B3  77 gDfvvFkldgrsef 90 
                        +D+++F+l ++ ++
  Aqcoe5G352400.1.p 255 KDVITFYLCEH-RE 267
                        *******8764.33 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.69E-204398No hitNo description
SuperFamilySSF541711.57E-144499IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.4E-164498IPR001471AP2/ERF domain
PROSITE profilePS5103216.04144103IPR001471AP2/ERF domain
SMARTSM003803.2E-1744104IPR001471AP2/ERF domain
PfamPF008472.1E-64491IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.104.2E-33163267IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.22E-27164269IPR015300DNA-binding pseudobarrel domain
CDDcd100174.51E-24165275No hitNo description
SMARTSM010192.4E-24166277IPR003340B3 DNA binding domain
PROSITE profilePS5086312.097166279IPR003340B3 DNA binding domain
PfamPF023626.9E-26166268IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MEEEMVSMVS NTVMAEASDS NSNSNSNLCH PNKRQKHDNS ASARFKGVVL QQNGHWGAQI  60
YVKHERIWLG TFNSEKEAAM AYDSAALKLR GDSFRNFPLT NITIQEPKFQ DLYKTEVILS  120
MIKDRSYNSK FMEFLRNQTQ KIEDKVELNL GNGGLMDGGF VYHQLFQKEL TPSDVGKLNR  180
LVIPKKHAVK YFPQVSEGKE GEEEDGGDVD DLQLPFVDRQ MKTWKFRYCY WKSSQSYVFT  240
RGWNRFVKEK ELKAKDVITF YLCEHREHPP FRMIDVGYNA SENINNGSVG GFSGYFRQNV  300
DLQLGLSGSL VRDRKQMEEE QNVIIKHQLY STSQVHEIGL EDHLRNRSNL YKEKQILL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A8e-2916526013100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010249446.11e-121PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like
SwissprotQ9C6P53e-91RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLA0A2G5E5N50.0A0A2G5E5N5_AQUCA; Uncharacterized protein
STRINGAquca_011_00122.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.12e-87RAV family protein