PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe4G297200.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 207aa    MW: 23223.7 Da    PI: 10.4496
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe4G297200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3482.3e-15128205183
                        EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                        f+k++++s+v+   +l lp +f+++h     + ++    tl de+g +W+ k+  +k+s    l++GW++F+ a++L  gD ++++
  Aqcoe4G297200.1.p 128 FVKQMLQSHVTGGFWLGLPSPFCKKHlpdT-DVPG---FTLIDEDGDKWSTKYLAEKTS----LSGGWRGFAIAHKLVHGDALILS 205
                        99************************8743.3333...8999***********666666....*******************9976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.0E-14120205IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-16125206IPR015300DNA-binding pseudobarrel domain
CDDcd100176.83E-22127206No hitNo description
PfamPF023621.4E-12128205IPR003340B3 DNA binding domain
SMARTSM010191.1E-8128205IPR003340B3 DNA binding domain
PROSITE profilePS5086311.801128206IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MVKANPTSYE EMRQKRIEEN KKRMQELNLP QLAQAVHNAS LKPSSQGKPR KVGKVTSNVV  60
VRRSSRISAK PAQEYKEVGQ FNLGRPRRCC STHRDLSNRV YADPEAMVDA NERAKVLKSK  120
LQNCFTSFVK QMLQSHVTGG FWLGLPSPFC KKHLPDTDVP GFTLIDEDGD KWSTKYLAEK  180
TSLSGGWRGF AIAHKLVHGD ALILSW*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016701849.15e-71PREDICTED: B3 domain-containing protein At5g42700-like isoform X1
SwissprotQ1G3M34e-55Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBLA0A2G5D3N51e-151A0A2G5D3N5_AQUCA; Uncharacterized protein
STRINGAquca_028_00035.11e-152(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.17e-54B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]