PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe4G223000.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 283aa    MW: 31870.9 Da    PI: 9.5979
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe4G223000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.91.8e-13169263395
                        EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                 B3   3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                        k+l++ d +++gr++lpkk  e +  +++ +e+++l l+   s   W +k++y  +++ ++y++ +++ e+vk+n+L+ gD+++++  ++++
  Aqcoe4G223000.1.p 169 KELKKTDCSSQGRIILPKKASEVNlpSLSAREGIQLALREvGSTSIWCFKYRYwpNNNTRMYLF-ENTGEYVKQNELQIGDSIILY--KDEG 257
                        889999**************9999**8899999******9677799*******55555555555.5********************..4466 PP

                        E..EEE CS
                 B3  90 felvvk 95 
                         e++++
  Aqcoe4G223000.1.p 258 NEFYIS 263
                        655665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.4E-21161264IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.44E-17164263IPR015300DNA-binding pseudobarrel domain
CDDcd100171.61E-18165266No hitNo description
SMARTSM010192.0E-12167268IPR003340B3 DNA binding domain
PROSITE profilePS508638.713167268IPR003340B3 DNA binding domain
PfamPF023624.8E-11169264IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MEFNKLFPTS NTSTSSTALT SSPTPNQEVN TTINHINPFP YPLPPHNYSS NYPYVAPEAQ  60
IFPSQSNLSQ SHPLVVPPYY LVPSISPAYR LDDASRILPM YLQHKWDPSV SKEARNRRRI  120
ARQIRSSSSK TSDGSSSSGS SSIPPTTTEN EDNNLIAPDG KKLNFILRKE LKKTDCSSQG  180
RIILPKKASE VNLPSLSARE GIQLALREVG STSIWCFKYR YWPNNNTRMY LFENTGEYVK  240
QNELQIGDSI ILYKDEGNEF YISCKKRSVS LSQHLQIIRG MQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9c_A3e-341592635109B3 domain-containing transcription factor LEC2
6j9c_D3e-341592635109B3 domain-containing transcription factor LEC2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026390252.12e-48B3 domain-containing transcription factor LEC2 isoform X1
STRINGXP_010260258.12e-40(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.12e-34B3 family protein