PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe4G200200.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 652aa    MW: 75092.8 Da    PI: 8.1432
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe4G200200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.62.6e-14531351198
                        HHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                 B3  11 lksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                        ++ ++l +p+kf++ +g k+  s    l+  +s+++W+v +  +k  g++++++GW eFvk +++ +   +vF++d++s+f   v +f+
  Aqcoe4G200200.1.p  53 FSIHILKIPNKFIRIFG-KE-LSDIALLKVpSSSKEWRVDV--KKDEGHIWFQSGWHEFVKYHNISVSHLLVFRYDRNSSF--GVVIFD 135
                        46699********5555.54.5534444444677*******..*********************************99998..677766 PP

2B350.53.7e-16223312398
                        EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                 B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                         ++ ps v+k+  l lp  f  +h ++  ++ ++tl+ ++ + W+v+    +++ ++ l++GWkeFv +ngL+e D+++F+ ++ + ++l+v
  Aqcoe4G200200.1.p 223 VTMRPSFVHKRFVLNLPIAFS-KHLQN--GDYDVTLRGSDRQMWKVRG--AGQP-QFRLRAGWKEFVLDNGLEEDDICIFEIVSMKHKQLKV 308
                        5788999999999*******8.66333..6789***************..7777.789***********************99889999*** PP

                        EEE- CS
                 B3  95 kvfr 98 
                        ++fr
  Aqcoe4G200200.1.p 309 SIFR 312
                        **98 PP

3B349.96e-16550641398
                        EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE.. CS
                 B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefel 92 
                         ++ ps+v  s  l +p+ fa+++ ++  ++  +tl+ ++g  W+ +l  + ++++  + +GWk Fv +n+Lke D+++F+++ ++ +  el
  Aqcoe4G200200.1.p 550 VTMRPSYVQGSFALNIPNIFAQKYLKDYFQG--VTLRVPNGGAWRAQL--SVGGCK--IYRGWKAFVVDNQLKEDDVCIFEVVdSDkNHIEL 635
                        5789********************5554454..9999***********..666665..779********************77355566667 PP

                        EEEEE- CS
                 B3  93 vvkvfr 98 
                        +v+++r
  Aqcoe4G200200.1.p 636 KVSIVR 641
                        776665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.4E-2036136IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-1737143IPR015300DNA-binding pseudobarrel domain
CDDcd100171.59E-1438135No hitNo description
PROSITE profilePS5086312.05543137IPR003340B3 DNA binding domain
SMARTSM010193.1E-752137IPR003340B3 DNA binding domain
PfamPF023621.8E-1153135IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.3E-18213312IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.26E-18216315IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.6E-8220314IPR003340B3 DNA binding domain
CDDcd100171.97E-16220312No hitNo description
PROSITE profilePS5086311.956221314IPR003340B3 DNA binding domain
PfamPF023628.3E-13223312IPR003340B3 DNA binding domain
SuperFamilySSF1019361.12E-18542641IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.8E-20542641IPR015300DNA-binding pseudobarrel domain
CDDcd100171.34E-15546641No hitNo description
SMARTSM010192.1E-11548643IPR003340B3 DNA binding domain
PROSITE profilePS5086311.462548643IPR003340B3 DNA binding domain
PfamPF023624.0E-14549640IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 652 aa     Download sequence    Send to blast
MERSKSQEEH CNRKRRQQDK RFYFFYKIIT ASCIQDRRIV TKTLSPSHTL IFFSIHILKI  60
PNKFIRIFGK ELSDIALLKV PSSSKEWRVD VKKDEGHIWF QSGWHEFVKY HNISVSHLLV  120
FRYDRNSSFG VVIFDTRASE IGYECETNDL EEPCIEIGTQ TSSENENSEE DSMTITVESD  180
YTNQETEARE FSSLQEEQLA NLDKERAIAA ANKFTSKKQF CIVTMRPSFV HKRFVLNLPI  240
AFSKHLQNGD YDVTLRGSDR QMWKVRGAGQ PQFRLRAGWK EFVLDNGLEE DDICIFEIVS  300
MKHKQLKVSI FRVHEDPKHW KRKPAHSRSP SCNPSRLVGN KGTENDEVDL SNRNCQYTIT  360
EPIISSALKF TSRRIDKENC SLTNSMDYGK ESDACIYQRK RPWECADDIE TYYMNEEGCE  420
VFGSIFRNIG YGGASGFCSQ SNCEPPSYTL FRPSNDNLRQ MENTCPLDSS PSVIYQSIQP  480
NRRKTKKSET NGDDSYCSKQ EHERRKFQVL IKQRPKALSV GRSRLVAAQE NERAIIETTG  540
FTSENPFCVV TMRPSYVQGS FALNIPNIFA QKYLKDYFQG VTLRVPNGGA WRAQLSVGGC  600
KIYRGWKAFV VDNQLKEDDV CIFEVVDSDK NHIELKVSIV RVHGHSLQLA T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A9e-1519064318144B3 domain-containing transcription factor VRN1
4i1k_B9e-1519064318144B3 domain-containing transcription factor VRN1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5E5400.0A0A2G5E540_AQUCA; Uncharacterized protein
STRINGAquca_011_00001.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-21B3 family protein