PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe4G168100.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 807aa    MW: 87758.6 Da    PI: 7.7242
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe4G168100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.35.9e-18262359196
                        EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                        f+k+l+ sd+++ grlvlpkk+ae++   ++++e++ l+++d +g +W +++++  +++s++yvl+ G     +   L++gD+v+F++ +  
  Aqcoe4G168100.2.p 262 FEKTLSASDAGRIGRLVLPKKCAEAYfpTISQPEGVPLKVQDAKGSEWVFQFRFwpNNNSRMYVLE-GVTPCIQNMSLQAGDIVTFSRLD-P 351
                        99**************************777779999***************9989999999***9.********************765.7 PP

                        EE..EEEE CS
                 B3  89 efelvvkv 96 
                        +++lv++ 
  Aqcoe4G168100.2.p 352 DGKLVMGS 359
                        77676665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.3E-30253365IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.01E-19259357IPR015300DNA-binding pseudobarrel domain
CDDcd100172.64E-22260357No hitNo description
SMARTSM010195.9E-19262362IPR003340B3 DNA binding domain
PfamPF023624.6E-15262358IPR003340B3 DNA binding domain
PROSITE profilePS5086310.757262363IPR003340B3 DNA binding domain
PROSITE profilePS5105013.991492542IPR011124Zinc finger, CW-type
PfamPF074965.8E-11497539IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 807 aa     Download sequence    Send to blast
MSCARKHSIV ASQSWSHTLK NRSPLSVSNG ISGQWWHSAN ARNVGTSQSD LQARLAYEFD  60
RSNGIERRVS SVPGIERAPK DPSERVAPSS DVPVHQRNPG GDMVVALNAL RREEGTADAL  120
PDPRHLPGES STVDARKGSI VEPHLNNSVA AKCFDTHANS RVNTQSSSGK DPLVPSNDAN  180
GSACVSGSQQ QRQTPSPPMA NQCHGNLQNG GDTYTENQIR NGKARGDGRG RNQLLPRYWP  240
KITDQELQQI SVDSNKIITP LFEKTLSASD AGRIGRLVLP KKCAEAYFPT ISQPEGVPLK  300
VQDAKGSEWV FQFRFWPNNN SRMYVLEGVT PCIQNMSLQA GDIVTFSRLD PDGKLVMGSR  360
KPSDASPSTQ DSRKSKNGNG VSKLAESNLK DANTWSEIDK SGYIAKDALR AQSSVLPSKR  420
KSSTLGLKNK RLQIENEDRI ELKLTWEEAQ GLLRPACNHH PDSIVVVDGH EFEEYEEAPI  480
LGKPTIFTTN NSGENIQWAQ CEECSKWRKL PVDALLPSKW TCSDNLWDPK RSSCSSDQEL  540
TDGQIQDLLS SSNDVASKKM KSAKKDSESV EGSEGGLDTL ANVAILTEEA LPSLAQPPTT  600
KHPRHRPGCS CIVCIQPPSG KGPKHSDTCV CNVCTTVKRR FRTLMERRAK RPPENEAGTS  660
RKKQQLVERV EPVDGLPTSS NAKSGVNPEM FVDGNDDDDI SCRKPSSPFK GGIDLNIQPE  720
REDDASPVSG SGSIRFVRDS ADLYHKQQKL PSSSRNRDVN TSGGSAEVGG VENHGIGVPQ  780
SCDPENGELN PPAPRPTWIP ATSGTG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A3e-642403652127B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1637650KRRFRTLMERRAKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010268825.10.0PREDICTED: B3 domain-containing protein Os07g0563300-like
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A2G5CCQ00.0A0A2G5CCQ0_AQUCA; Uncharacterized protein
STRINGAquca_063_00016.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-154HSI2-like 1