PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe4G168100.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 907aa    MW: 98863.3 Da    PI: 7.6687
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe4G168100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.17e-18362459196
                        EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                        f+k+l+ sd+++ grlvlpkk+ae++   ++++e++ l+++d +g +W +++++  +++s++yvl+ G     +   L++gD+v+F++ +  
  Aqcoe4G168100.1.p 362 FEKTLSASDAGRIGRLVLPKKCAEAYfpTISQPEGVPLKVQDAKGSEWVFQFRFwpNNNSRMYVLE-GVTPCIQNMSLQAGDIVTFSRLD-P 451
                        99**************************777779999***************9989999999***9.********************765.7 PP

                        EE..EEEE CS
                 B3  89 efelvvkv 96 
                        +++lv++ 
  Aqcoe4G168100.1.p 452 DGKLVMGS 459
                        77676665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.5E-30353465IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-19359457IPR015300DNA-binding pseudobarrel domain
CDDcd100173.31E-22360457No hitNo description
PfamPF023626.0E-15362458IPR003340B3 DNA binding domain
PROSITE profilePS5086310.757362463IPR003340B3 DNA binding domain
SMARTSM010195.9E-19362462IPR003340B3 DNA binding domain
PROSITE profilePS5105013.991592642IPR011124Zinc finger, CW-type
PfamPF074966.7E-11597639IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 907 aa     Download sequence    Send to blast
MTSCSSSSSQ STAKICCFNL DCKEMKLDRS FRKAWRLRSG DFAELCDRCG TAYEEGRYCE  60
IFHINAAGWR SCESCRKPLH CGCIVSITGF ILLDAGGVEC MSCARKHSIV ASQSWSHTLK  120
NRSPLSVSNG ISGQWWHSAN ARNVGTSQSD LQARLAYEFD RSNGIERRVS SVPGIERAPK  180
DPSERVAPSS DVPVHQRNPG GDMVVALNAL RREEGTADAL PDPRHLPGES STVDARKGSI  240
VEPHLNNSVA AKCFDTHANS RVNTQSSSGK DPLVPSNDAN GSACVSGSQQ QRQTPSPPMA  300
NQCHGNLQNG GDTYTENQIR NGKARGDGRG RNQLLPRYWP KITDQELQQI SVDSNKIITP  360
LFEKTLSASD AGRIGRLVLP KKCAEAYFPT ISQPEGVPLK VQDAKGSEWV FQFRFWPNNN  420
SRMYVLEGVT PCIQNMSLQA GDIVTFSRLD PDGKLVMGSR KPSDASPSTQ DSRKSKNGNG  480
VSKLAESNLK DANTWSEIDK SGYIAKDALR AQSSVLPSKR KSSTLGLKNK RLQIENEDRI  540
ELKLTWEEAQ GLLRPACNHH PDSIVVVDGH EFEEYEEAPI LGKPTIFTTN NSGENIQWAQ  600
CEECSKWRKL PVDALLPSKW TCSDNLWDPK RSSCSSDQEL TDGQIQDLLS SSNDVASKKM  660
KSAKKDSESV EGSEGGLDTL ANVAILTEEA LPSLAQPPTT KHPRHRPGCS CIVCIQPPSG  720
KGPKHSDTCV CNVCTTVKRR FRTLMERRAK RPPENEAGTS RKKQQLVERV EPVDGLPTSS  780
NAKSGVNPEM FVDGNDDDDI SCRKPSSPFK GGIDLNIQPE REDDASPVSG SGSIRFVRDS  840
ADLYHKQQKL PSSSRNRDVN TSGGSAEVGG VENHGIGVPQ SCDPENGELN PPAPRPTWIP  900
ATSGTG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A1e-633404652127B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1737750KRRFRTLMERRAKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019055852.10.0PREDICTED: B3 domain-containing protein Os07g0563300-like
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A2G5CCN10.0A0A2G5CCN1_AQUCA; Uncharacterized protein
STRINGAquca_063_00016.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1