PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe4G126800.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 149aa    MW: 16430 Da    PI: 10.1806
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe4G126800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B330.94.9e-1081148282
                        EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                 B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                        +k++++s+v+   +l lp  f+ +h  ++        + e+g +W+ k+    k+ +  l++GW++F+ a++L  gD +vF
  Aqcoe4G126800.1.p  81 VKQMLQSHVTGGFWLGLPSLFCGTHL-PE--------TGEDGDKWSTKF--LAKKTG--LSGGWRGFAIAHKLVHGDALVF 148
                        699*******************8883.32........4799********..555444..9********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.3E-875148IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-1276148IPR015300DNA-binding pseudobarrel domain
CDDcd100178.75E-1678148No hitNo description
PfamPF023625.1E-881148IPR003340B3 DNA binding domain
PROSITE profilePS5086310.137106148IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MNLRGMHADQ KVRANLKPNQ MVLQYACLMS PRMVGSWVPI GITVHRDHSN RVYADSESLV  60
DAIERAEVLK SKLQNGFRSL VKQMLQSHVT GGFWLGLPSL FCGTHLPETG EDGDKWSTKF  120
LAKKTGLSGG WRGFAIAHKL VHGDALVF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022144182.11e-40B3 domain-containing protein At5g42700-like
SwissprotQ1G3M31e-32Y3918_ARATH; B3 domain-containing protein At3g19184
SwissprotQ9FMZ41e-32Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBLA0A2G5D3N53e-54A0A2G5D3N5_AQUCA; Uncharacterized protein
STRINGAquca_028_00035.14e-55(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.15e-35B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]