PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G396900.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family RAV
Protein Properties Length: 356aa    MW: 39834.7 Da    PI: 8.5503
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G396900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.92.6e-1359107155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s+ykGV   + +grW A+I++      ++r++lg+f  +eeAak ++ a+++++g
  Aqcoe3G396900.1.p  59 SQYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEEEAAKSYDIAAQRFRG 107
                        78****9888.8*********3.....5*************************98 PP

2B3102.42.6e-32185284196
                        EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                        f+k+ tpsdv+k++rlv+pk++ae++     g++  +++ l +ed sg++W+++++y+++s++yvltkGW++Fvk++ Lk+gD++ F++++ 
  Aqcoe3G396900.1.p 185 FEKTVTPSDVGKLNRLVIPKQHAEKNfplqiGSI-SKGMLLNFEDNSGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKCLKAGDVISFQRSSG 275
                        99***************************97555.5899*************************************************9877 PP

                        SEE..EEEE CS
                 B3  88 sefelvvkv 96 
                        ++++l++ +
  Aqcoe3G396900.1.p 276 QDKQLYIDW 284
                        888788776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.16E-1659115IPR016177DNA-binding domain
CDDcd000181.23E-2559114No hitNo description
Gene3DG3DSA:3.30.730.101.1E-1960115IPR001471AP2/ERF domain
PfamPF008475.2E-860107IPR001471AP2/ERF domain
SMARTSM003803.8E-2960121IPR001471AP2/ERF domain
PROSITE profilePS5103219.99460115IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.107.9E-42176295IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.79E-31183287IPR015300DNA-binding pseudobarrel domain
CDDcd100172.62E-28184273No hitNo description
PfamPF023621.2E-29185286IPR003340B3 DNA binding domain
PROSITE profilePS5086314.367185288IPR003340B3 DNA binding domain
SMARTSM010194.7E-25185288IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009910Biological Processnegative regulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MDSSSCIDES TTSDSTPAMV IASPEKESPD KLCRVGSGAS VVVDSEGGVE AESRKLPSSQ  60
YKGVVPQPNG RWGAQIYEKH QRVWLGTFNE EEEAAKSYDI AAQRFRGRDA VTNFKPLSSS  120
DEDNIEAAFL SSHSKAEIVD MLRKHTYNDE LEQSKRNYGI NINKGKEFMG CNRSNRTSNA  180
RENLFEKTVT PSDVGKLNRL VIPKQHAEKN FPLQIGSISK GMLLNFEDNS GKVWRFRYSY  240
WNSSQSYVLT KGWSRFVKEK CLKAGDVISF QRSSGQDKQL YIDWKARNNE PISSMVLVHS  300
IQPVNPVQVI RLFGVNIFEI PISSNNSNCN GKRLRDVEPF SLESACKKPS IVEAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-5518229211122DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00139DAPTransfer from AT1G13260Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010265251.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor RAV1-like
SwissprotQ9ZWM91e-142RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1
TrEMBLA0A2G5F6990.0A0A2G5F699_AQUCA; Uncharacterized protein
STRINGAquca_002_01106.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.11e-145related to ABI3/VP1 1
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  3. Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF
    Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development.
    PLoS Genet., 2016. 12(2): p. e1005833
    [PMID:26829043]
  4. Zhao Y, et al.
    ABA receptor PYL9 promotes drought resistance and leaf senescence.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(7): p. 1949-54
    [PMID:26831097]