PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G217300.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 291aa    MW: 33203.4 Da    PI: 6.7967
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G217300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.87.2e-17105202296
                        EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                 B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                        +k+l +sdv+++gr+vlpk+  e++  ++ ++e++ +++ d +g r+W++k++y  +++s++yvl+ ++ +F + ++L++gD ++++ d+ +
  Aqcoe3G217300.1.p 105 QKELRHSDVGNLGRVVLPKRASEAFlpSLASKEGVLISMDDMDGlRVWNFKYRYwpNNNSRMYVLE-NTGDFIRTHELQTGDYLMLYKDD-R 194
                        79999*****************999**7777799*********99*********89999999***9.********************443.6 PP

                        EE..EEEE CS
                 B3  89 efelvvkv 96 
                        ++++v++ 
  Aqcoe3G217300.1.p 195 NQKYVIRG 202
                        66666665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.0E-2497205IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.22E-19103203IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.009104206IPR003340B3 DNA binding domain
SMARTSM010194.6E-12104205IPR003340B3 DNA binding domain
PfamPF023623.8E-14105201IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010116Biological Processpositive regulation of abscisic acid biosynthetic process
GO:0010262Biological Processsomatic embryogenesis
GO:0010373Biological Processnegative regulation of gibberellin biosynthetic process
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MADFPSKSNL FVPIEDDNKN NYTELTRSGP SRKLLAAEFR AAISFGTNRK KRMVRQKRIN  60
VNGLLAFVTS SSSSSSSSSS SPANIQKNLH VPQVIEPKML RFLLQKELRH SDVGNLGRVV  120
LPKRASEAFL PSLASKEGVL ISMDDMDGLR VWNFKYRYWP NNNSRMYVLE NTGDFIRTHE  180
LQTGDYLMLY KDDRNQKYVI RGRKSFDLNV CCDTKMFLDS GVQITPDFEV NKENYFDVNY  240
PMIDDTDMQF SFNNPFPDLN DDNSMNIPSY SSLGTVNSFG TFDNFSLDDF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A1e-451002051106B3 domain-containing transcription factor FUS3
6j9b_D1e-451002051106B3 domain-containing transcription factor FUS3
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00382DAPTransfer from AT3G26790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026382224.12e-88B3 domain-containing transcription factor FUS3-like
TrEMBLA0A2G5CIN80.0A0A2G5CIN8_AQUCA; Uncharacterized protein
STRINGAquca_052_00041.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.14e-48B3 family protein