PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G167000.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 190aa    MW: 21303.9 Da    PI: 4.7712
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G167000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.64.5e-1372165197
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sef 90 
                        f  v+++s v+   +lvlp k   ++  +  + +  ++ ++  + W++++i ++ s +  + +GWk+Fv +n+Lk+gD +vF+l+  + ++ 
  Aqcoe3G167000.1.p  72 FHVVFLKSQVSGIYQLVLPTKMS-SIL-P--QAVVPVVLTRLDKNWKMNYIGEGLS-HKRFDSGWKNFVIDNNLKVGDGCVFELSeCSkDCL 158
                        66778899999999999999976.663.2..334556777889*******654444.4579**********************986555777 PP

                        ..EEEEE CS
                 B3  91 elvvkvf 97 
                        +++v+++
  Aqcoe3G167000.1.p 159 KFRVQIL 165
                        7777766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.3E-1766166IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.04E-1767165IPR015300DNA-binding pseudobarrel domain
CDDcd100172.17E-1670165No hitNo description
PROSITE profilePS5086311.57572168IPR003340B3 DNA binding domain
SMARTSM010199.8E-1072164IPR003340B3 DNA binding domain
PfamPF023625.1E-1172164IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MDFSACDTGN EGHLKSSQEE IIPTSQDRNC EGNMKQNQTH GCDSQHQSPP QDHTSSISDE  60
EHWPLSDDKP YFHVVFLKSQ VSGIYQLVLP TKMSSILPQA VVPVVLTRLD KNWKMNYIGE  120
GLSHKRFDSG WKNFVIDNNL KVGDGCVFEL SECSKDCLKF RVQILEGDFP SELLDRVDGK  180
CSDTPILID*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028100303.12e-47B3 domain-containing protein Os04g0386900-like
TrEMBLA0A2G5ESC41e-111A0A2G5ESC4_AQUCA; Uncharacterized protein
STRINGAquca_005_00533.11e-112(Aquilegia coerulea)