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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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v4.0
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe3G047000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | RAV | ||||||||
Protein Properties | Length: 371aa MW: 41893.6 Da PI: 8.934 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 43.6 | 7.5e-14 | 59 | 107 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ ++r++lg+f ++eAaka++ a+++++g Aqcoe3G047000.1.p 59 SQYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEKEAAKAYDIAAQRYRG 107 78****9888.8*********3.....5**********99*************98 PP | |||||||
2 | B3 | 100 | 1.4e-31 | 183 | 282 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+ tpsdv+k++rlv+pk++ae+h g++ +++ l +ed+ g++W+++++y+++s++yvltkGW++Fvk+++L++gD+v F ++ Aqcoe3G047000.1.p 183 FEKTVTPSDVGKLNRLVIPKQHAEKHfplqIGDTCKGMLLNFEDKGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKRLQAGDVVSFLRSIGG 274 99***************************95566799*************************************************976445 PP EE..EEEE CS B3 89 efelvvkv 96 +++l++ + Aqcoe3G047000.1.p 275 DKQLYIDW 282 55566655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 6.21E-17 | 59 | 115 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.38E-23 | 59 | 114 | No hit | No description |
PROSITE profile | PS51032 | 19.651 | 60 | 115 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.6E-8 | 60 | 107 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.4E-26 | 60 | 121 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.9E-20 | 60 | 115 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 8.3E-42 | 180 | 294 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.7E-30 | 180 | 274 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.37E-29 | 181 | 280 | No hit | No description |
PROSITE profile | PS50863 | 14.226 | 183 | 286 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.1E-29 | 183 | 283 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.6E-24 | 183 | 286 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 371 aa Download sequence Send to blast |
MDSSCIDENM MSDSVSMSPR TMMIAIPPPE KLCHVRSGSS VVLDSENGVE AESRKLPSSQ 60 YKGVVPQPNG RWGAQIYEKH QRVWLGTFNE EKEAAKAYDI AAQRYRGRDA ITNFKPLLDN 120 KEDDFEAAFL SSHSKSEIVD MLRKHTYNDE LEQSKRIRGD DSSICKRNRE GVYMPSYGTK 180 HLFEKTVTPS DVGKLNRLVI PKQHAEKHFP LQIGDTCKGM LLNFEDKGGK VWRFRYSYWN 240 SSQSYVLTKG WSRFVKEKRL QAGDVVSFLR SIGGDKQLYI DWKPRTTSST SIELQSPAAI 300 YPVTSVNLVQ PQPVEVVRLF GVNIFKIPVS SSSSSSSVVD YSSWNGKRMR DVDFLSVECC 360 KKQCLGELAL * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 9e-54 | 182 | 288 | 13 | 120 | DNA-binding protein RAV1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010265251.1 | 1e-174 | PREDICTED: AP2/ERF and B3 domain-containing transcription factor RAV1-like | ||||
Swissprot | Q9ZWM9 | 1e-137 | RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1 | ||||
TrEMBL | A0A2G5D7Z0 | 0.0 | A0A2G5D7Z0_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_026_00225.1 | 0.0 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13260.1 | 1e-136 | related to ABI3/VP1 1 |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe3G047000.1.p |
Publications ? help Back to Top | |||
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