PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G047000.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family RAV
Protein Properties Length: 371aa    MW: 41893.6 Da    PI: 8.934
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G047000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.67.5e-1459107155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s+ykGV   + +grW A+I++      ++r++lg+f  ++eAaka++ a+++++g
  Aqcoe3G047000.1.p  59 SQYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEKEAAKAYDIAAQRYRG 107
                        78****9888.8*********3.....5**********99*************98 PP

2B31001.4e-31183282196
                        EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                        f+k+ tpsdv+k++rlv+pk++ae+h     g++ +++ l +ed+ g++W+++++y+++s++yvltkGW++Fvk+++L++gD+v F ++   
  Aqcoe3G047000.1.p 183 FEKTVTPSDVGKLNRLVIPKQHAEKHfplqIGDTCKGMLLNFEDKGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKRLQAGDVVSFLRSIGG 274
                        99***************************95566799*************************************************976445 PP

                        EE..EEEE CS
                 B3  89 efelvvkv 96 
                        +++l++ +
  Aqcoe3G047000.1.p 275 DKQLYIDW 282
                        55566655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.21E-1759115IPR016177DNA-binding domain
CDDcd000181.38E-2359114No hitNo description
PROSITE profilePS5103219.65160115IPR001471AP2/ERF domain
PfamPF008471.6E-860107IPR001471AP2/ERF domain
SMARTSM003802.4E-2660121IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.9E-2060115IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.108.3E-42180294IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.7E-30180274IPR015300DNA-binding pseudobarrel domain
CDDcd100171.37E-29181280No hitNo description
PROSITE profilePS5086314.226183286IPR003340B3 DNA binding domain
PfamPF023629.1E-29183283IPR003340B3 DNA binding domain
SMARTSM010191.6E-24183286IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MDSSCIDENM MSDSVSMSPR TMMIAIPPPE KLCHVRSGSS VVLDSENGVE AESRKLPSSQ  60
YKGVVPQPNG RWGAQIYEKH QRVWLGTFNE EKEAAKAYDI AAQRYRGRDA ITNFKPLLDN  120
KEDDFEAAFL SSHSKSEIVD MLRKHTYNDE LEQSKRIRGD DSSICKRNRE GVYMPSYGTK  180
HLFEKTVTPS DVGKLNRLVI PKQHAEKHFP LQIGDTCKGM LLNFEDKGGK VWRFRYSYWN  240
SSQSYVLTKG WSRFVKEKRL QAGDVVSFLR SIGGDKQLYI DWKPRTTSST SIELQSPAAI  300
YPVTSVNLVQ PQPVEVVRLF GVNIFKIPVS SSSSSSSVVD YSSWNGKRMR DVDFLSVECC  360
KKQCLGELAL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A9e-5418228813120DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010265251.11e-174PREDICTED: AP2/ERF and B3 domain-containing transcription factor RAV1-like
SwissprotQ9ZWM91e-137RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1
TrEMBLA0A2G5D7Z00.0A0A2G5D7Z0_AQUCA; Uncharacterized protein
STRINGAquca_026_00225.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.11e-136related to ABI3/VP1 1
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  3. Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF
    Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development.
    PLoS Genet., 2016. 12(2): p. e1005833
    [PMID:26829043]
  4. Zhao Y, et al.
    ABA receptor PYL9 promotes drought resistance and leaf senescence.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(7): p. 1949-54
    [PMID:26831097]