PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G011700.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family RAV
Protein Properties Length: 348aa    MW: 40053.2 Da    PI: 8.1419
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G011700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.41.5e-1256101354
                AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                        ykGV ++  +g W A+I+       +kr++lg+f t++eAa a++ a+ kl+
  Aqcoe3G011700.1.p  56 YKGVVFHQ-NGHWGAQIYAK-----HKRIWLGTFRTEKEAAMAYDSAAVKLR 101
                        9******9.8*********3.....5**********99**********9998 PP

2B386.71.9e-27182280184
                        EEEE-..-HHHHTT-EE--HHH.HTT.................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT-- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.................ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk 75 
                        f+k+ltpsdv+k++r+v+pkk+a ++                 gg+   + +l++ d++ rsWe++++y+k+s++yv+tkGW++Fvk+++Lk
  Aqcoe3G011700.1.p 182 FQKELTPSDVGKLNRIVIPKKYALKYfpqiyeesenenenkdeGGI--DDLQLVFFDRHMRSWEFRYCYWKSSQSYVFTKGWNRFVKEKELK 271
                        99**************************999987766554444222..455799999999******************************** PP

                        TT-EEEEEE CS
                 B3  76 egDfvvFkl 84 
                        ++D+v+F+ 
  Aqcoe3G011700.1.p 272 TKDVVTFYK 280
                        *******92 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103217.50455110IPR001471AP2/ERF domain
SMARTSM003803.6E-2055116IPR001471AP2/ERF domain
CDDcd000189.89E-2356110No hitNo description
PfamPF008473.0E-756101IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-1656111IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.5E-1756111IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.102.2E-33179289IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.4E-26180283IPR015300DNA-binding pseudobarrel domain
CDDcd100171.71E-23181279No hitNo description
PfamPF023621.5E-24182280IPR003340B3 DNA binding domain
SMARTSM010191.3E-20182289IPR003340B3 DNA binding domain
PROSITE profilePS5086311.632182295IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MPLITSNRVS MEEEETVIMV SNTMMTSEAA SDSNIKTSKV CHSSKRQKHD LSSAPYKGVV  60
FHQNGHWGAQ IYAKHKRIWL GTFRTEKEAA MAYDSAAVKL RSGDSHRNFP LTTLTIQEAK  120
FQDLYKMDTV LSMIRDKTYN SEFMEFVRNQ SQKIEDKVCH INPDNAGDSM DGAGGFLCHQ  180
LFQKELTPSD VGKLNRIVIP KKYALKYFPQ IYEESENENE NKDEGGIDDL QLVFFDRHMR  240
SWEFRYCYWK SSQSYVFTKG WNRFVKEKEL KTKDVVTFYK CEQRDMSKTG LPQAFCMIDV  300
QQNNNIGVAN GFSTYVGHNN VELQHGFGRH GSPDDRHTKQ NIAIRNL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-2617828510107DNA-binding protein RAV1
5os9_A1e-26181281796B3 domain-containing transcription factor NGA1
5os9_B1e-26181281796B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010249446.11e-113PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like
SwissprotQ9C6P51e-95RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLA0A2G5C0Y50.0A0A2G5C0Y5_AQUCA; Uncharacterized protein
STRINGAquca_142_00013.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.11e-96RAV family protein