PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe2G410300.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 348aa    MW: 39571.5 Da    PI: 6.8704
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe2G410300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.74.4e-18143231184
                        EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                        f+k+ltpsd++  +r+ +p+k+a++h       ++k ++ t+t++d +++++++k+  + + ++  lt+GWk+F k +++ + D+v F+ 
  Aqcoe2G410300.1.p 143 FEKKLTPSDAGDFNRMAVPRKCAKQHfppldyTNPKYQP-TITFYDIHNNEFKMKYESWPGCQMNALTRGWKKFLKFHDIHASDTVSFYA 231
                        99****************************985566566.************************************************94 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.7E-24139239IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-22140237IPR015300DNA-binding pseudobarrel domain
CDDcd100172.77E-19142230No hitNo description
SMARTSM010196.4E-9143244IPR003340B3 DNA binding domain
PROSITE profilePS508638.868143243IPR003340B3 DNA binding domain
PfamPF023621.3E-15143231IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MADSDCNGGR EEIEQIAMNI AVVDHLDQVV IESSVKEEMN MSLVLANQVI VEPNMEEENK  60
SLVAVVASHE EINVESSMEK ENKSLVLAKR KRCKNNEDTT TTMAPDASMQ RNNNTTRQPG  120
DQLINDHVVV VHADSINWGK LLFEKKLTPS DAGDFNRMAV PRKCAKQHFP PLDYTNPKYQ  180
PTITFYDIHN NEFKMKYESW PGCQMNALTR GWKKFLKFHD IHASDTVSFY AGVDHHLHLA  240
RAHDATNYVY GIHHYREPVL WTRTLRFFGH YYIISEKTPY PVNNQVAANH GGGAIIANGE  300
HAAMFRPNGG RKRIRKAADP RTNYSEQIAE NNQQLVLQSY SCKDEQQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-1514224013113DNA-binding protein RAV1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.21e-17related to ABI3/VP1 2