PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe2G310900.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family CO-like
Protein Properties Length: 398aa    MW: 44647 Da    PI: 5.6174
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe2G310900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.81.9e-072870238
           zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                       ++r C+ ++e ++ l+C+ ++  lC +C  + H+       Ht
  Aqcoe2G310900.1.p 28 KQRLCDFCGESKALLYCRADSAKLCFNCDKQVHSTnqlftkHT 70
                       5789******99*********************6677777776 PP

2zf-B_box17.87e-0672117340
           zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg.........Htvv 40 
                         + C+ +++++ ++ C + +  lC++C    H g         H+++
  Aqcoe2G310900.1.p  72 YQLCDFCDSNPSSILCSTENLVLCQNCDWDLH-GksssssssvHDRR 117
                        679************************98888.43566666676665 PP

3CCT56.97.3e-20353395143
                CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                        R+  ++RYkeK+ktR+++ +irYesRKa+Ae R R++GrF+k 
  Aqcoe2G310900.1.p 353 RDSLISRYKEKKKTRRYDHHIRYESRKARAEGRSRIRGRFAKI 395
                        66779************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.6652774IPR000315B-box-type zinc finger
SMARTSM003361.9E-142774IPR000315B-box-type zinc finger
PfamPF006432.9E-62870IPR000315B-box-type zinc finger
CDDcd000214.63E-73071No hitNo description
CDDcd000212.08E-474105No hitNo description
PROSITE profilePS5101713.89353395IPR010402CCT domain
PfamPF062033.8E-14353394IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MVDSSHSTTP QTQNNELNEE KNTPHQFKQR LCDFCGESKA LLYCRADSAK LCFNCDKQVH  60
STNQLFTKHT RYQLCDFCDS NPSSILCSTE NLVLCQNCDW DLHGKSSSSS SSVHDRRSIE  120
GFSGCPSGVE LCSIFGIEDV KDKCFMNCGG GYLEESDLYS TPPDVGVDGF SDLLVWETPP  180
IFSIDDLIGS NDSTQSFQAI GVPSLPKNRN TTCGKYKEEI LSQLREMVKL ENCFIDDGED  240
LESLLGFQPL VPELNSQPGK VSRSSEHRVE PILFSLNEKN EDKWEKNSCD MAVQVPCPSA  300
CLKSYAVTKS SIDLVDDGTD ANGDHDSYLQ PVIIETPCIV PKVALHKPIT QNRDSLISRY  360
KEKKKTRRYD HHIRYESRKA RAEGRSRIRG RFAKIEH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGVIT_07s0104g01360.t011e-115(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.12e-82B-box type zinc finger protein with CCT domain