PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe2G241500.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 314aa    MW: 35914.2 Da    PI: 9.7844
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe2G241500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.12.4e-1129115698
                        ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                 B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                        +++++++s+++ +p +f+e +g k   +  l+l+ ++g  W++k+  +k  gr+   +GW++Fv+   +  g  + F++dg s+f   v ++
  Aqcoe2G241500.1.p  29 INESNMQSHQIEFPSEFVEVYGDK--LPEALVLKVRTGDFWNIKV--KKFVGRIRTLRGWQSFVEHYSIGFGYCLFFTYDGVSRF--DVVIC 114
                        5899999999********999877..6778***************..88888877778**********************99999..88888 PP

                        - CS
                 B3  98 r 98 
                        +
  Aqcoe2G241500.1.p 115 D 115
                        7 PP

2B345.11.9e-14220312198
                        EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                        f  ++ p++ +ks+ +++pk+f+  h  g+  +s tl+  +e g++W v++  +++++   +tkG + F ++ ++k++D+++F+l++++++ 
  Aqcoe2G241500.1.p 220 FTITMYPNYIFKSS-MTVPKSFMMCHlPGI--GSATLQ-VSEGGKKWPVEI--NNHRRVWRMTKGLSVFLRESNIKVRDTCLFELINKKDAL 305
                        55567777777777.********6666333..665666.56899*******..*********************************999998 PP

                        .EEEEE- CS
                 B3  92 lvvkvfr 98 
                        ++v++++
  Aqcoe2G241500.1.p 306 FHVHIIS 312
                        9999876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.9E-1620115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.02E-1621116IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.77124117IPR003340B3 DNA binding domain
SMARTSM010193.0E-725117IPR003340B3 DNA binding domain
CDDcd100171.52E-1125115No hitNo description
PfamPF023627.8E-929115IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.6E-17214312IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-16214311IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.714219313IPR003340B3 DNA binding domain
SMARTSM010195.2E-8219312IPR003340B3 DNA binding domain
CDDcd100175.14E-12219312No hitNo description
PfamPF023627.4E-13220312IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MSELKGKQKG NCSSPSFAKM KRSKFFRVIN ESNMQSHQIE FPSEFVEVYG DKLPEALVLK  60
VRTGDFWNIK VKKFVGRIRT LRGWQSFVEH YSIGFGYCLF FTYDGVSRFD VVICDAGDTE  120
IDYPSKHHKF KNLIHEGTEL GESTSKECRK NSAKNLDVTS SKENIHQRTE IGEPSVYRAV  180
EDMAPKDVTA TKKVSFDTQA INPNENVQSA NVFKLKHPFF TITMYPNYIF KSSMTVPKSF  240
MMCHLPGIGS ATLQVSEGGK KWPVEINNHR RVWRMTKGLS VFLRESNIKV RDTCLFELIN  300
KKDALFHVHI ISQ*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5FBF31e-139A0A2G5FBF3_AQUCA; Uncharacterized protein
STRINGAquca_001_00601.11e-140(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-28B3 family protein