PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe2G125400.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 273aa    MW: 31438.4 Da    PI: 9.7132
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe2G125400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.31.2e-124721890
                       --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                 B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90
                       +pkkf++++g+    s +++l+      W+v+l  rk +g   +++GWkeFv+   +++g  +vF+++++s+f
  Aqcoe2G125400.1.p  4 IPKKFLTRYGKY--MSNDVVLKVCGCMAWRVEL--RKADGFACFQNGWKEFVEHYSICAGHYLVFRYNRKSQF 72
                       9********855..6779***************..********************************988877 PP

2B331.82.6e-10150238191
                        EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                        ffk+++++++ + +   +p+ f +++  +    +   l+ + ++g ++W v + y  ++    ++kG + F  +n+++ gD++ F+l+++++
  Aqcoe2G125400.1.p 150 FFKITMQPSYVNARYWLIPRIFSDKYlpE----GLESLSHQVPNGkNKWVVGC-YLYRGTDLRMSKGLSLFMLENNIQIGDVCYFELIKKKN 236
                        778777777777777999*****999542....334688888888799****9.666666799************************98655 PP

                        E. CS
                 B3  90 fe 91 
                          
  Aqcoe2G125400.1.p 237 VV 238
                        53 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.011180IPR003340B3 DNA binding domain
PROSITE profilePS5086312.449180IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-17380IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.39E-16387IPR015300DNA-binding pseudobarrel domain
CDDcd100171.30E-9477No hitNo description
PfamPF023621.8E-9472IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.7E-14144241IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-13146241IPR015300DNA-binding pseudobarrel domain
CDDcd100175.48E-9149241No hitNo description
SMARTSM010190.012150245IPR003340B3 DNA binding domain
PfamPF023621.3E-8150239IPR003340B3 DNA binding domain
PROSITE profilePS508638.12150247IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MQGIPKKFLT RYGKYMSNDV VLKVCGCMAW RVELRKADGF ACFQNGWKEF VEHYSICAGH  60
YLVFRYNRKS QFGVIIFGLS GNEIDYSRSS NNLGEFNHAK HAPLPENEGG DGNNGDDSSG  120
RDLMTRRLVK TEERKVAIQI TSPFMSKYPF FKITMQPSYV NARYWLIPRI FSDKYLPEGL  180
ESLSHQVPNG KNKWVVGCYL YRGTDLRMSK GLSLFMLENN IQIGDVCYFE LIKKKNVVLK  240
VMYMTPFYVN SRYMLINKKD HVLKVTIASQ ES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A7e-1612625024143B3 domain-containing transcription factor VRN1
4i1k_B7e-1612625024143B3 domain-containing transcription factor VRN1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5DIM10.0A0A2G5DIM1_AQUCA; Uncharacterized protein
STRINGAquca_019_00028.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-20B3 family protein