PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe2G040300.3.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family SRS
Protein Properties Length: 360aa    MW: 38027.7 Da    PI: 8.1127
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe2G040300.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF7022143.5e-661473024153
             DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssae 95 
                         ta+CqdCGnqakkdC+h+RCRtCCksrg+dCath+kstWvpaa+rrerq   +a    aa+s +++  k++r    ++++++s+t++s+++
  Aqcoe2G040300.3.p 147 STATCQDCGNQAKKDCSHRRCRTCCKSRGYDCATHIKSTWVPAARRRERQLSSTAV---AASSGSTSGVKKPRLI--DSHTTTSHTSTSNTT 233
                        6789*********************************************7766665...4444567888888865..999999********* PP

             DUF702  96 skkeletss...........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                        ++++++tss           lP +++++avf+cvrv++vddg++e+aYq++v+igGhvfkG+LydqG+e
  Aqcoe2G040300.3.p 234 PPRSFDTSSshhqdasfrdaLPGQIRAPAVFKCVRVTAVDDGDDEYAYQAVVKIGGHVFKGFLYDQGIE 302
                        *******999*********************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051426.0E-61148302IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.2E-26150192IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016246.3E-30254301IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0048364Biological Processroot development
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MGMVGLRGGD VFVVAPASSF HPHNQHHHHH HHQHQHDSIH SDPITNSNTA LGVGVGVGVG  60
LIPLLTPGNM GIEDGHEDLN LNSNRSRGGS GGHGIQLWQN QQSHHHHNHN QSHYLSNKKP  120
MLFDSDNSMN LLTVSGSGAG NSAATTSTAT CQDCGNQAKK DCSHRRCRTC CKSRGYDCAT  180
HIKSTWVPAA RRRERQLSST AVAASSGSTS GVKKPRLIDS HTTTSHTSTS NTTPPRSFDT  240
SSSHHQDASF RDALPGQIRA PAVFKCVRVT AVDDGDDEYA YQAVVKIGGH VFKGFLYDQG  300
IEGREGFPNM AELHLGGTSG NAGRNGASSS SPVIDPSDVY AASGGGLLGG TSLLGVKNY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010276642.11e-124PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like
RefseqXP_010651514.11e-123PREDICTED: protein LATERAL ROOT PRIMORDIUM 1, partial
SwissprotQ94CK96e-93LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBLF6HA241e-124F6HA24_VITVI; Putative uncharacterized protein
STRINGVIT_06s0009g03450.t011e-123(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.24e-70Lateral root primordium (LRP) protein-related