PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G498500.3.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 225aa    MW: 25633.5 Da    PI: 10.1336
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G498500.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.75.2e-19132220197
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                        f+k +++s+v+   +l lp +f++++  +k ++ t+tl desg++W   +  rk++    l++GW +F ++++L +gD +vF+l++ +ef  
  Aqcoe1G498500.3.p 132 FVKSMLQSHVTGGFWLGLPSHFCRDFL-PK-SDETVTLVDESGEEWPTVYLARKTG----LSGGWMGFSRDHKLVDGDALVFELVKPTEF-- 215
                        89*********************9994.32.5569***************656665....***********************9987777.. PP

                        EEEEE CS
                 B3  93 vvkvf 97 
                        +v ++
  Aqcoe1G498500.3.p 216 KVYII 220
                        77665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.1E-23126221IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-26126222IPR015300DNA-binding pseudobarrel domain
CDDcd100175.40E-30130221No hitNo description
PROSITE profilePS5086314.099132223IPR003340B3 DNA binding domain
SMARTSM010193.7E-27132223IPR003340B3 DNA binding domain
PfamPF023624.3E-17132220IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MVKAAKQTAY EQIRQQRLEE NKKRMEELNL TQLARAVTIA ASPKPSPMKR VKPRIPRQET  60
ALIQVRRSSR VAKNPAPVYK EVLLDILERP RRHFNRRTDL SNRVYASDEA RLKAIEKAEE  120
LEAKLENGSP SFVKSMLQSH VTGGFWLGLP SHFCRDFLPK SDETVTLVDE SGEEWPTVYL  180
ARKTGLSGGW MGFSRDHKLV DGDALVFELV KPTEFKVYII KVDD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024973293.11e-100B3 domain-containing protein Os06g0194400-like
SwissprotQ1G3M38e-73Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBLA0A2G5DRL01e-161A0A2G5DRL0_AQUCA; Uncharacterized protein
STRINGAquca_016_00429.11e-162(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.13e-66B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]