PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G498500.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 225aa    MW: 25646.5 Da    PI: 10.2104
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G498500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.74.2e-18137220190
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                        f+k +++s+v+   +l lp +f++++  +k ++ t+tl desg++W   +  rk++    l++GW +F ++++L +gD +vF+l++ +ef
  Aqcoe1G498500.2.p 137 FVKSMLQSHVTGGFWLGLPSHFCRDFL-PK-SDETVTLVDESGEEWPTVYLARKTG----LSGGWMGFSRDHKLVDGDALVFELVKPTEF 220
                        89*********************9994.32.5569***************656665....***********************9876555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.1E-23131220IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-20131221IPR015300DNA-binding pseudobarrel domain
CDDcd100172.63E-27135221No hitNo description
PfamPF023624.1E-16137220IPR003340B3 DNA binding domain
PROSITE profilePS5086313.296137224IPR003340B3 DNA binding domain
SMARTSM010191.4E-23137223IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MVKAAKQTAY EQIRQQRLEE NKKRMEELNL TQLARAVTIA ASPKPSPMKR VKPRIPRQET  60
ALIQVRRSSR VAKNPAPVYK EVLLDILERP RRIFLGRHFN RRTDLSNRVY ASDEARLKAI  120
EKAEELEAKL ENGSPSFVKS MLQSHVTGGF WLGLPSHFCR DFLPKSDETV TLVDESGEEW  180
PTVYLARKTG LSGGWMGFSR DHKLVDGDAL VFELVKPTEF KQED*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023728492.13e-94B3 domain-containing protein Os06g0194400-like
SwissprotQ69V365e-67Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBLA0A2G5DRL01e-162A0A2G5DRL0_AQUCA; Uncharacterized protein
STRINGAquca_016_00429.11e-162(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.12e-58B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]