PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G498500.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 230aa    MW: 26220.2 Da    PI: 10.2327
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G498500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.65.5e-19137225197
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                        f+k +++s+v+   +l lp +f++++  +k ++ t+tl desg++W   +  rk++    l++GW +F ++++L +gD +vF+l++ +ef  
  Aqcoe1G498500.1.p 137 FVKSMLQSHVTGGFWLGLPSHFCRDFL-PK-SDETVTLVDESGEEWPTVYLARKTG----LSGGWMGFSRDHKLVDGDALVFELVKPTEF-- 220
                        89*********************9994.32.5569***************656665....***********************9987777.. PP

                        EEEEE CS
                 B3  93 vvkvf 97 
                        +v ++
  Aqcoe1G498500.1.p 221 KVYII 225
                        77665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.3E-23131226IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-26131227IPR015300DNA-binding pseudobarrel domain
CDDcd100171.11E-29135226No hitNo description
SMARTSM010193.7E-27137228IPR003340B3 DNA binding domain
PfamPF023624.5E-17137225IPR003340B3 DNA binding domain
PROSITE profilePS5086314.099137228IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MVKAAKQTAY EQIRQQRLEE NKKRMEELNL TQLARAVTIA ASPKPSPMKR VKPRIPRQET  60
ALIQVRRSSR VAKNPAPVYK EVLLDILERP RRIFLGRHFN RRTDLSNRVY ASDEARLKAI  120
EKAEELEAKL ENGSPSFVKS MLQSHVTGGF WLGLPSHFCR DFLPKSDETV TLVDESGEEW  180
PTVYLARKTG LSGGWMGFSR DHKLVDGDAL VFELVKPTEF KVYIIKVDD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023728492.11e-98B3 domain-containing protein Os06g0194400-like
SwissprotQ1G3M34e-70Y3918_ARATH; B3 domain-containing protein At3g19184
SwissprotQ69V361e-70Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBLA0A2G5DRL01e-168A0A2G5DRL0_AQUCA; Uncharacterized protein
STRINGAquca_016_00429.11e-169(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-63B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]