PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G437200.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 349aa    MW: 39360.2 Da    PI: 6.1568
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G437200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3103.89e-3388192199
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f+k ltpsdv+k++rlv+pk++ae++       +++ e++  l++ede g+ W+++++y+++s++yvltkGW++Fvk+++L++gD+v F++ 
  Aqcoe1G437200.1.p  88 FEKPLTPSDVGKLNRLVIPKQHAEKYfplsqrvDSV-EKGLLLSFEDEAGKLWRFRYSYWNSSQSYVLTKGWSRFVKEKQLDAGDVVSFERR 178
                        99****************************997555.5788*************************************************88 PP

                        SSSEE..EEEEE-S CS
                 B3  86 grsefelvvkvfrk 99 
                        ++++++l+++++r+
  Aqcoe1G437200.1.p 179 RHDGQQLYIRWRRR 192
                        779999*****996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.1E-4181192IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-3186192IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.33988192IPR003340B3 DNA binding domain
PfamPF023621.1E-2988192IPR003340B3 DNA binding domain
SMARTSM010199.2E-2788193IPR003340B3 DNA binding domain
CDDcd100175.93E-2890183No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010073Biological Processmeristem maintenance
GO:0010358Biological Processleaf shaping
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MNEFSSNNLH QQGFWWNNTT TTHKGVGVIP QPNGVWGAPI YDNHTTAHSY ERVAGQGNNN  60
DSITDEIDNN DKEEIGVEEE EEELEHMFEK PLTPSDVGKL NRLVIPKQHA EKYFPLSQRV  120
DSVEKGLLLS FEDEAGKLWR FRYSYWNSSQ SYVLTKGWSR FVKEKQLDAG DVVSFERRRH  180
DGQQLYIRWR RRLAPPSVHD SRLMSMTAGG GGGGGVACST NAANTNPSSP WTRVYYSAHP  240
YPSHSHHLHG PLLYQPADCL HAAVEPVVQN PVTTGNKKIV RLFGVNLDCE LDEPESPGPD  300
NSSYSNEGRT HFLYSQGHDM NHNQQDFNFS REFNQTRNYP GGSGDMPI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-48851925113B3 domain-containing transcription factor NGA1
5os9_B2e-48851925113B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026411891.15e-95B3 domain-containing protein At2g36080-like
SwissprotQ9FNI39e-62Y5625_ARATH; B3 domain-containing protein At5g06250
TrEMBLA0A2G5CBA80.0A0A2G5CBA8_AQUCA; Uncharacterized protein
STRINGAquca_072_00063.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11580.13e-56B3 family protein