PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G406800.4.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 936aa    MW: 103041 Da    PI: 6.4689
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G406800.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.51.2e-18332431198
                        EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                        f+kvl+ sd+++ grlvlpk +ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++ +  
  Aqcoe1G406800.4.p 332 FEKVLSASDAGRIGRLVLPKACAEAYfpPINQPEGLPLRIQDIKGKEWLFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRLD-P 421
                        99**************************666677788***************9989999999***9.********************766.6 PP

                        EE..EEEEE- CS
                 B3  89 efelvvkvfr 98 
                        e++lv+++++
  Aqcoe1G406800.4.p 422 EGKLVMGFRK 431
                        6666666654 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-30324435IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.49E-20329434IPR015300DNA-binding pseudobarrel domain
CDDcd100171.94E-22330431No hitNo description
SMARTSM010191.4E-21332432IPR003340B3 DNA binding domain
PfamPF023627.5E-16332431IPR003340B3 DNA binding domain
PROSITE profilePS5086311.11332433IPR003340B3 DNA binding domain
PROSITE profilePS5105013.96591641IPR011124Zinc finger, CW-type
PfamPF074963.1E-11596638IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 936 aa     Download sequence    Send to blast
MAAVSSSSSS VYCMNAICGV TSSIRWTHGW RLRSGGFANL CERCGSAYEQ SAFCDIFHLK  60
ESGWRECYTC SKRLHCGCIA SKSLLVLTDN GGVQCINCIR SSELSNIQSD ENPAGISMTT  120
TNNVGELQLT SLDYKMGSDD NGVKELMLSN MEGKERNNFL QSQKDDANGS LGQLKREQGL  180
SLVREVGSTT FSNFNETLFG ATQFAKQNNH KDHVGGKDTY ESLPQTCLTM TLGVSSGAAS  240
LAQPLVSSIV EGREQSKMSL QQGQRPRPRT SKMGIGIAPE ASKDNHPQLR VARPPIEGRG  300
RNQLLPRYWP RITDQELQQI SGDSNSTIVP LFEKVLSASD AGRIGRLVLP KACAEAYFPP  360
INQPEGLPLR IQDIKGKEWL FQFRFWPNNN SRMYVLEGVT PCIQSMQLQA GDTVTFSRLD  420
PEGKLVMGFR KSASNCASVK DTQPAIPNAP NENFFSGVIE NLPRMSGQPG LLQSFKGSTD  480
PHLNVVSERL HSADGDANLC KAEKQGGRPN GGLLLQPEKK KSRNIGSKSK RLLIDNEDAL  540
ELKLTWEEAH DLLRPPPRAK PNVVKIDEFD FEEYEEAPIL GKKTIFTSLS SGGQDQWAQC  600
DSCSKWRRLP VDVFLPVNWT CSENAWDSKR SACSVPNELS PMELENLLRL NMDFKRRKVA  660
SQPVLDHEPS GLDALATAAV LGDSRLDVGT SLVATTTKHP RHRPGCTCIV CIQPPSGKGP  720
KHKPTCTCNV CMTVKRRFKT LMMRKKKRQS EKEAEVAQSK NQIWYPKDEE VESASQSAML  780
VLDSSENEGR QANMLDSSDQ TKVLTEKTES SKAHLDLNFH PDREDDSLAM SARISMMGLL  840
QVANRPLETY LRQNGLSSLV TEQQASSGSH APPQPTAEGE GRPADDGFCA AVPGEMEQEK  900
EQEHESEHEH EKESGGDLGD DGLDKSQCQS QNEPV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A4e-673104342126B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1734745KRRFKTLMMRKK
2734747KRRFKTLMMRKKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010252057.10.0PREDICTED: B3 domain-containing protein Os07g0679700-like isoform X1
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A2G5CME00.0A0A2G5CME0_AQUCA; Uncharacterized protein
STRINGAquca_045_00208.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]