PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G406800.3.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 670aa    MW: 73967.7 Da    PI: 7.6466
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G406800.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.27.3e-19336435198
                        EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                        f+kvl+ sd+++ grlvlpk +ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++ +  
  Aqcoe1G406800.3.p 336 FEKVLSASDAGRIGRLVLPKACAEAYfpPINQPEGLPLRIQDIKGKEWLFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRLD-P 425
                        99**************************666677788***************9989999999***9.********************766.6 PP

                        EE..EEEEE- CS
                 B3  89 efelvvkvfr 98 
                        e++lv+++++
  Aqcoe1G406800.3.p 426 EGKLVMGFRK 435
                        6666666654 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.3E-31328439IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-20333438IPR015300DNA-binding pseudobarrel domain
CDDcd100179.60E-23334435No hitNo description
PROSITE profilePS5086311.11336437IPR003340B3 DNA binding domain
SMARTSM010191.4E-21336436IPR003340B3 DNA binding domain
PfamPF023624.6E-16336435IPR003340B3 DNA binding domain
PROSITE profilePS5105013.96595645IPR011124Zinc finger, CW-type
PfamPF074962.1E-11600642IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 670 aa     Download sequence    Send to blast
MAAVSSSSSS VYCMNAICGV TSSIRWTHGW RLRSGGFANL CERCGSAYEQ SAFCDIFHLK  60
ESGWRECYTC SKRLHCGCIA SKSLLVLTDN GGVQCINCIR SSELSNLFMQ IQSDENPAGI  120
SMTTTNNVGE LQLTSLDYKM GSDDNGVKEL MLSNMEGKER NNFLQSQKDD ANGSLGQLKR  180
EQGLSLVREV GSTTFSNFNE TLFGATQFAK QNNHKDHVGG KDTYESLPQT CLTMTLGVSS  240
GAASLAQPLV SSIVEGREQS KMSLQQGQRP RPRTSKMGIG IAPEASKDNH PQLRVARPPI  300
EGRGRNQLLP RYWPRITDQE LQQISGDSNS TIVPLFEKVL SASDAGRIGR LVLPKACAEA  360
YFPPINQPEG LPLRIQDIKG KEWLFQFRFW PNNNSRMYVL EGVTPCIQSM QLQAGDTVTF  420
SRLDPEGKLV MGFRKSASNC ASVKDTQPAI PNAPNENFFS GVIENLPRMS GQPGLLQSFK  480
GSTDPHLNVV SERLHSADGD ANLCKAEKQG GRPNGGLLLQ PEKKKSRNIG SKSKRLLIDN  540
EDALELKLTW EEAHDLLRPP PRAKPNVVKI DEFDFEEYEE APILGKKTIF TSLSSGGQDQ  600
WAQCDSCSKW RRLPVDVFLP VNWTCSENAW DSKRSACSVP NELSPMELEN LLRLNMDVGA  660
VREGRKEKL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C5e-683144381125B3 domain-containing transcription repressor VAL1
5yzz_C5e-683144381125B3 domain-containing transcription repressor VAL1
5z00_C5e-683144381125B3 domain-containing transcription repressor VAL1
5z00_G5e-683144381125B3 domain-containing transcription repressor VAL1
5z00_K5e-683144381125B3 domain-containing transcription repressor VAL1
5z00_M5e-683144381125B3 domain-containing transcription repressor VAL1
6j9a_A4e-683144382126B3 domain-containing transcription repressor VAL1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010252057.10.0PREDICTED: B3 domain-containing protein Os07g0679700-like isoform X1
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A2G5CME00.0A0A2G5CME0_AQUCA; Uncharacterized protein
STRINGAquca_045_00208.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]