PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G309700.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 903aa    MW: 98839.9 Da    PI: 8.1281
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G309700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.22.7e-17356455198
                        EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                        f+k l+ sd+++ grlvlpk++ae++   +++ e++ l+++d +g++W + +++  +++s++yvl+ G     ++ +L++gD+v+F++++  
  Aqcoe1G309700.1.p 356 FEKMLSASDAGRIGRLVLPKRCAEAYfpAISQSEGIPLKVQDAKGQEWVLHFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRID-P 445
                        89**************************777778899***************9989999999***9.********************887.8 PP

                        EE..EEEEE- CS
                 B3  89 efelvvkvfr 98 
                        +++l ++ ++
  Aqcoe1G309700.1.p 446 GGKLAIGCRK 455
                        8888888775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-26349456IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.03E-18353449IPR015300DNA-binding pseudobarrel domain
CDDcd100178.64E-21354455No hitNo description
SMARTSM010199.1E-18356456IPR003340B3 DNA binding domain
PfamPF023622.4E-14356455IPR003340B3 DNA binding domain
PROSITE profilePS5086310.405356457IPR003340B3 DNA binding domain
PROSITE profilePS5105012.825584634IPR011124Zinc finger, CW-type
PfamPF074962.0E-9589631IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 903 aa     Download sequence    Send to blast
MSSLITKRSS FCYNLNCKGD AAAAPPEGQQ KLIKRAWRLH NGDFAHLCLP CSAVFEEGKF  60
CETFHLDAAG WRSCDSCEKR VHCGCIVSIN SYLLLDAGGV ECMPCAWKNI IMAPNQIWPS  120
SSSLSHSNRQ NNLSVKNWNQ SAGPCAISGH RQQQLNMLNT SAVLSDLNPT MQYDVDGLRK  180
ISRDYSAPDL EKKSLGDPSD KVNNCNLFMM DSLTNGNGVV DMLAASHSLR WNEMSLNSLQ  240
GIAYRASLQS SSSKEDPSIP AIARVPYSLR NEANVPEDVS LTQSRHQTIS TPMANQSNVN  300
IQTGAKSCGE SPVRKGRHPV DTRGRSQLLP RYSPKIIDPE LQKISEASNS VITPLFEKML  360
SASDAGRIGR LVLPKRCAEA YFPAISQSEG IPLKVQDAKG QEWVLHFRFW PNNNSRMYVL  420
EGVTPCIQSM QLQAGDTVTF SRIDPGGKLA IGCRKAVRIS PSDQDKLSLK TVGDVSKISE  480
VNEADPAGSW PENGKSGYAS KDRAGSKSRP RKRRGSSLGF KSKRLSIDNE DLIELKLTWE  540
EAQGLLRPPP DYVPNVMVID GHEFEEYEEA PLLGKPTICG TDQVGEMFQW AQCEDCSKWR  600
KVPINANLPF GWTCSANLWD PKRSSCSSAQ EAKPKQLEDV VSSRKTASAS KKTKPVRKHM  660
DADKVSEGLN TPVEHSPILE DDALPSVKTT TRHPRHRFGC TCIVCIQSPS GKGLKHKDSC  720
TCNVCLTVRR RRLSLLKHFS EKDMESARQK LEQLKLPENP TMKDDVQKVV YSDGADSNPK  780
LMADENSNDF PRENPSSPIG QIDLNILLER EDGPSSISGS GNMVRLQSGT HKLYPVLHGS  840
TGLSGDVDLA LNERLPGEGR CNGNGARGEL GTVVQHATSP GASNGTPIPL CISMSVIVPT  900
SS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A9e-623334561124B3 domain-containing transcription repressor VAL1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010268825.10.0PREDICTED: B3 domain-containing protein Os07g0563300-like
TrEMBLA0A2G5EGR00.0A0A2G5EGR0_AQUCA; Uncharacterized protein
STRINGAquca_008_00005.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-127HSI2-like 1