PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G258900.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 311aa    MW: 35091.5 Da    PI: 8.3722
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G258900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.45.1e-13182271390
                        EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                 B3   3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                        k+l++ d +++gr++lpkk  e +  +++ +e+++ltl+   s   W ++++y  +++s++y+++ +++++vk+n+L+ gD ++++  ++++
  Aqcoe1G258900.2.p 182 KELKRTDCGSQGRIILPKKDSEVNlpSLSAREGIQLTLREvGSTTIWCFRYRYwpNNNSRMYLFE-NTRDYVKQNELQIGDNIILY--KDEG 270
                        789999***************999**8999999*******67779********777777777776.******************99..3344 PP

                        E CS
                 B3  90 f 90 
                         
  Aqcoe1G258900.2.p 271 N 271
                        4 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.8E-22173278IPR015300DNA-binding pseudobarrel domain
CDDcd100177.66E-19178281No hitNo description
SuperFamilySSF1019367.59E-17179277IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.3E-9180287IPR003340B3 DNA binding domain
PfamPF023622.2E-10182270IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MDSNKPIATS NTTTSTTSPT SSATPNQEVN TTINHVDPLP PHLLLPPPHN YSSNCPNVAP  60
EAQIFPSHSY PYQGLHYQPN QSQSHPLVVP PYYLVPSISP AYKLDDSSRI LPMYLQYKWD  120
PSVSKEARNR RRMARQMSSS SCRTSEGSSS SGSSSILPTT TENEDNDLIA HDGKKLKFIL  180
RKELKRTDCG SQGRIILPKK DSEVNLPSLS AREGIQLTLR EVGSTTIWCF RYRYWPNNNS  240
RMYLFENTRD YVKQNELQIG DNIILYKDEG NELNGLSFMV QRICSTKICC HSSTEQCHVD  300
GQIIMIYKRI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9c_A7e-341712734106B3 domain-containing transcription factor LEC2
6j9c_D7e-341712734106B3 domain-containing transcription factor LEC2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026390252.12e-46B3 domain-containing transcription factor LEC2 isoform X1
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.18e-34B3 family protein