PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G171200.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 176aa    MW: 20364.5 Da    PI: 9.7487
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G171200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.42.2e-1273159283
                        EEE-..-HHHHT.T-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                 B3   2 fkvltpsdvlks.grlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                        +k+lt+sdv  + grl+l +kfa+e        + ++++++++ ++d++g++  + ++++k+   yv+ +GWk+F   n+L++ D +++ 
  Aqcoe1G171200.1.p  73 KKALTKSDVRGTqGRLMLTNKFAKEKinillreEDNPKKGIKVPVYDQKGNKTVMVYKHWKS---YVIINGWKQFYTNNNLQQDDEITLW 159
                        5889999997655***********99*******88999**************9999955555...8999****************88765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.53E-1869164IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.6E-1571165IPR015300DNA-binding pseudobarrel domain
CDDcd100171.42E-1271159No hitNo description
PfamPF023623.7E-974162IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MAVVVEEENG NDHPDNQVSL ADEGAENLRY LNRKRLDVES AAALQALIIF QPLIVPPIVR  60
LRDQVLGPCS YIKKALTKSD VRGTQGRLML TNKFAKEKIN ILLREEDNPK KGIKVPVYDQ  120
KGNKTVMVYK HWKSYVIING WKQFYTNNNL QQDDEITLWV FRRARDWKLC FAFTW*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.17e-19B3 family protein