PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G101000.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 289aa    MW: 33330.2 Da    PI: 9.6283
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G101000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.21.4e-189102199
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS...-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg...rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                        ffk+  ++d +++ +l++p +f+++++++ e+++ ++ e        sW v++  +++ ++++lt+GWk+Fv+++ L   Df+vF+++g++ 
  Aqcoe1G101000.1.p   9 FFKII-HADLFTTEQLRIPPDFLKHISKD-ESGIAVIDEG--PdatYSWHVQF--CRTEDGMFLTDGWKDFVRDHSLGKYDFLVFRYEGNMY 94 
                        56655.99***************777766.4664455444..34479******..**********************************999 PP

                        E..EEEEE-S CS
                 B3  90 felvvkvfrk 99 
                        f  +v +f++
  Aqcoe1G101000.1.p  95 F--TVAIFDQ 102
                        9..9999986 PP

2B346.94.9e-15188279198
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                        f+  l  s+v  s  + +p +fa+++   ++++++ +led +sgr W++++  + +     +++GW  Fv +n+L++gD+++F+l+g  + +
  Aqcoe1G101000.1.p 188 FIRPLYASSVYISYVVNIPADFARTYL--PTRKTEFVLEDhLSGRFWTLNF--NPGT-LNSFSGGWPTFVLDNQLEAGDICIFELTG--KWR 272
                        56677888888888999********95..346679*****9**********..5544.367999********************987..455 PP

                        .EEEEE- CS
                 B3  92 lvvkvfr 98 
                        +++++fr
  Aqcoe1G101000.1.p 273 MRIHIFR 279
                        7899888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.3E-224105IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-215105IPR015300DNA-binding pseudobarrel domain
CDDcd100171.05E-177101No hitNo description
PROSITE profilePS5086313.6068103IPR003340B3 DNA binding domain
SMARTSM010199.3E-149103IPR003340B3 DNA binding domain
PfamPF023626.0E-169102IPR003340B3 DNA binding domain
SuperFamilySSF1019361.73E-21181279IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-20181280IPR015300DNA-binding pseudobarrel domain
CDDcd100172.96E-18186279No hitNo description
SMARTSM010191.6E-12188281IPR003340B3 DNA binding domain
PROSITE profilePS5086314.212188281IPR003340B3 DNA binding domain
PfamPF023626.2E-13190280IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MRSDMKPEFF KIIHADLFTT EQLRIPPDFL KHISKDESGI AVIDEGPDAT YSWHVQFCRT  60
EDGMFLTDGW KDFVRDHSLG KYDFLVFRYE GNMYFTVAIF DQTGCQKDVG FNKRMHQKLG  120
SSSGGKHRGR PLKTLIEVPR RRVGRPPKDL PLLSQVRGRS PSRRMPTEKE KADVWKAATA  180
FTSCFPYFIR PLYASSVYIS YVVNIPADFA RTYLPTRKTE FVLEDHLSGR FWTLNFNPGT  240
LNSFSGGWPT FVLDNQLEAG DICIFELTGK WRMRIHIFRA CQTTKAHF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5EFW90.0A0A2G5EFW9_AQUCA; Uncharacterized protein
STRINGAquca_009_00893.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-20B3 family protein