PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco031794.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C2H2
Protein Properties Length: 344aa    MW: 39368.4 Da    PI: 8.1422
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco031794.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.00011173192120
                  EEETTTTEEESSHHHHHHHH CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                  ++C++C k+F+r  nL+ H+
  Aco031794.1 173 FSCSICMKTFNRYNNLQMHM 192
                  89*****************9 PP

2zf-C2H216.62.2e-05257279123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C +Cgk+F  k + ++H +++
  Aco031794.1 257 FQCRKCGKPFAVKGDWRTHEKNC 279
                  89*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.85E-5171198No hitNo description
Gene3DG3DSA:3.30.160.606.5E-5172192IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.4173195IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.907173200IPR007087Zinc finger, C2H2
PROSITE patternPS000280175195IPR007087Zinc finger, C2H2
SMARTSM00355230220252IPR015880Zinc finger, C2H2-like
SuperFamilySSF576675.89E-6243277No hitNo description
Gene3DG3DSA:3.30.160.602.9E-5243277IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035546257277IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.517257277IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MGLRKCPMDD EFGLYFQSTP FFEWLKPPTS SSSSSSPSPP PLLHREDDEE EAAAAACRKS  60
ASSIPPLTES QCLPLLSRLE EDKRTNIKEE EASITDYKYF DHLSIKNCTQ KEITVSLNIG  120
LPGTAPGGDY DDHEENRSLG YKKEEDMEQV EDYKERRYWI PSPSQILVGP VRFSCSICMK  180
TFNRYNNLQM HMWGHGSEYR KGPESLKGTQ TIAMLKLPCY CCAHGCKNNI NHPRAKPLKD  240
FRTLQTHYKR KHGSKPFQCR KCGKPFAVKG DWRTHEKNCG KLWFCSCGSD FKHKRSLNDH  300
VRSFGNDHSP CFPSEFVGKE KEFIIRFDHH KSTTENTVSV NYS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6616680.0KM661668.1 Ananas bracteatus clone 44351 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020086689.10.0zinc finger protein WIP3-like
SwissprotQ9SGD11e-107ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLA0A199UU390.0A0A199UU39_ANACO; Zinc finger protein WIP3 (Fragment)
STRINGXP_008813791.11e-123(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44723667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51220.11e-104WIP domain protein 5
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]