PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco031656.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C2H2
Protein Properties Length: 165aa    MW: 17222.8 Da    PI: 7.5055
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco031656.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.0004280102123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++C + F ++  L  H++ H
  Aco031656.1  80 FSCNYCRRKFYSSQALGGHQNAH 102
                  89******************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.12E-768111No hitNo description
PROSITE profilePS5015711.28180107IPR007087Zinc finger, C2H2
PROSITE patternPS00028082104IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MDYYNMDETF QKDGEKKVGS EHAEAVTPQL GSKAEGEDSD EGTSVELDLI GSLGATDRPP  60
SSSSSSPPPP SPDREPPRVF SCNYCRRKFY SSQALGGHQN AHKHERSLAK RGAAAAAMML  120
PPPXRGACGS GRVARAPRVA LRAGPPEVGS AVGECGGNRT HVSA*
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the regulation of shoot development, downstream of photomorphogenic activation (Probable). Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development (PubMed:24808098). {ECO:0000269|PubMed:24808098, ECO:0000305|PubMed:8980531}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by white light in dark-grown seedlings. {ECO:0000269|PubMed:10794528}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020081606.11e-115zinc finger protein 4-like
SwissprotQ424852e-19ZFP1_ARATH; Zinc finger protein 1
TrEMBLA0A199VDG65e-81A0A199VDG6_ANACO; Zinc finger protein 3
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24625.14e-16zinc finger protein 7
Publications ? help Back to Top
  1. Joseph MP, et al.
    The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development.
    Plant Physiol., 2014. 165(3): p. 1203-1220
    [PMID:24808098]