PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco029409.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family HSF
Protein Properties Length: 262aa    MW: 28580.2 Da    PI: 5.4245
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco029409.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.23.5e-35221122101
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k ye+++d+++++++sw eng++fvv+ + efa+++LpkyFkh+nf+SFvRQLn+YgFkkv +++         weF+++sF++g+++ll++i+
   Aco029409.1  22 FLMKAYELVDDPAVDDVVSWGENGSTFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFKKVVTDR---------WEFANESFRRGERRLLSEIH 109
                   9*****************************************************************99.........******************** PP

                   XXX CS
  HSF_DNA-bind  99 rkk 101
                   r++
   Aco029409.1 110 RRR 112
                   *96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.31E-3318111IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.9E-5418111IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.6E-3719111IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000567.2E-202245IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004478.3E-3122111IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.2E-206072IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406185IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.2E-207385IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MHPSRGSGAG AGASALSSSP PFLMKAYELV DDPAVDDVVS WGENGSTFVV WRPAEFARDL  60
LPKYFKHNNF SSFVRQLNTY GFKKVVTDRW EFANESFRRG ERRLLSEIHR RRVCPAVAVA  120
VPMPIQSPGS SGEDPQALSL SSTTSPPQLL PPPPPPPHVD LAEENAWLRT ENARLSRELG  180
DMRGLCSNIF RLVTTYTADE GTSSVPPPPP PPAPPPPPQA LELFPRRTPE EEEDAVSVLF  240
GVPIRGRREP SARAPGADPE E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-26911116129Heat shock factor protein 1
5d5v_B4e-26911116129Heat shock factor protein 1
5d5v_D4e-26911116129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020081205.10.0heat stress transcription factor B-2b-like
SwissprotQ6Z9C88e-69HFB2B_ORYSJ; Heat stress transcription factor B-2b
TrEMBLA0A199UR500.0A0A199UR50_ANACO; Heat stress transcription factor B-2b
STRINGXP_008799550.14e-75(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.13e-58heat shock transcription factor B2A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Xiang J, et al.
    Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice.
    Plant Cell Rep., 2013. 32(11): p. 1795-806
    [PMID:23949687]