PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco027928.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family bZIP
Protein Properties Length: 163aa    MW: 18058.1 Da    PI: 10.773
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco027928.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_150.45e-1678139162
                  XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                  +ke kr +r+ +NR++A+  R+RKka++  Le kvk Le++N++L ++l++l++e + l++ 
  Aco027928.1  78 DKEHKRLKRLLRNRVSAQQARERKKAYLNDLEAKVKDLEKKNSELEERLSTLQNENQMLRQI 139
                  5899*****************************************************99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR000411.0E-5621IPR001630cAMP response element binding (CREB) protein
PRINTSPR000411.0E-57793IPR001630cAMP response element binding (CREB) protein
SMARTSM003381.8E-1678142IPR004827Basic-leucine zipper domain
PfamPF001704.5E-1479140IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.79480143IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.13E-1482140No hitNo description
Gene3DG3DSA:1.20.5.1702.8E-1782142No hitNo description
CDDcd147042.17E-1583134No hitNo description
PROSITE patternPS00036085100IPR004827Basic-leucine zipper domain
PRINTSPR000411.0E-595115IPR001630cAMP response element binding (CREB) protein
PRINTSPR000411.0E-5115132IPR001630cAMP response element binding (CREB) protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MQEQATSSLP SSSERSSSSA PPMEVKEGVE SDEEIRRVPE FGAGASTSGR EAGSAAGPDR  60
TQSSAQTGQR RRGRSPADKE HKRLKRLLRN RVSAQQARER KKAYLNDLEA KVKDLEKKNS  120
ELEERLSTLQ NENQMLRQIL KNTTLSRRGD RAVAVPTEKV QQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2oqq_A7e-16103142342Transcription factor HY5
2oqq_B7e-16103142342Transcription factor HY5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010914895.15e-82PREDICTED: transcription factor HY5
SwissprotO246466e-66HY5_ARATH; Transcription factor HY5
TrEMBLM0U4B42e-73M0U4B4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P28570_0014e-73(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140838111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11260.15e-66bZIP family protein