PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco027680.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family HSF
Protein Properties Length: 391aa    MW: 40941.1 Da    PI: 4.4052
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco027680.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.65.3e-35421322101
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d++++++isw+++g++f+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F++g+++ll++i+
   Aco027680.1  42 FLTKTYQLVDDPAVDDVISWNDDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANDCFRRGERRLLCDIH 129
                   9*****************************************************************99.........******************** PP

                   XXX CS
  HSF_DNA-bind  99 rkk 101
                   r+k
   Aco027680.1 130 RRK 132
                   *98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.0E-3733126IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.6E-5838131IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.71E-3539131IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.1E-3142131IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-204265IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-208092IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434081105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-2093105IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MGGGGGGGAA AMAPPPVGEQ AGDTTSAAAA AAGGQRSLPT PFLTKTYQLV DDPAVDDVIS  60
WNDDGSTFIV WRPAEFARDL LPKYFKHNNF SSFVRQLNTY GFRKIVPDRW EFANDCFRRG  120
ERRLLCDIHR RKITPPAAGA AAPSAAQVTV AAAIPVAVPV THTGSPTISG EEQVLSSNSS  180
PGAPPPPPPP PLTAASAPST SGSGGAGDLH EENERLRGEN SRLSRELGQM KNLCNNILLL  240
MSKYAASQQP GSDSSSPAPP PPEAAPMLEL MPSSAAAAAA AAAAALEEEE EEEEEEAVDE  300
AEEEEDPVKA EEEGTPSPRL FGVSIGIKRS REDDGEDPPP PAMAEVKSEP PDPQEGPGAH  360
QSWPIYRPRA IHHSQRSSAT SSNGPDRDGQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-264213429131Heat shock factor protein 1
5d5v_B6e-264213429131Heat shock factor protein 1
5d5v_D6e-264213429131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00432DAPTransfer from AT4G11660Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0986291e-118FP098629.1 Phyllostachys edulis cDNA clone: bphylf056i09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020081852.10.0heat stress transcription factor B-2b-like
SwissprotQ6Z9C81e-114HFB2B_ORYSJ; Heat stress transcription factor B-2b
TrEMBLA0A199UR200.0A0A199UR20_ANACO; Heat stress transcription factor B-2b
STRINGOB08G29340.11e-124(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.13e-68HSF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Xiang J, et al.
    Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice.
    Plant Cell Rep., 2013. 32(11): p. 1795-806
    [PMID:23949687]